Factsheet for PGSC0003DMT400054615

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44550.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G44550.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069730.2.1	Tomato	plasma membrane	90.95	92.82
KRH37705	Soybean	extracellular, plasma membrane, plastid, vacuole	52.76	55.56
KRH12746	Soybean	cytosol, plasma membrane, vacuole	53.77	53.23
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	54.27	52.94
AT4G20390.1	Thale cress	extracellular, mitochondrion, plasma membrane, vacuole	49.75	50.25
Bra033751.1-P	Field mustard	plasma membrane	48.24	50.0
KRH43078	Soybean	peroxisome, plasma membrane, plastid, vacuole	48.74	50.0
AT5G44550.1	Thale cress	plasma membrane	49.25	49.75
CDY49491	Canola	plasma membrane	49.25	49.25
CDY63706	Canola	endoplasmic reticulum, plasma membrane, plastid	48.74	48.99
CDY49020	Canola	plasma membrane	48.74	48.74
Bra039516.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	48.24	48.48
CDY14930	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.24	48.48
CDX76458	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	48.24	48.24
CDY31439	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	46.73	46.73
KRH59207	Soybean	extracellular, plasma membrane, vacuole	50.25	42.92
GSMUA_Achr7P08030_001	Banana	plasma membrane	41.71	40.89
Os12t0610800-01	Rice	plasma membrane	38.69	39.49
TraesCS5A01G049000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	37.19	37.76
TraesCS5B01G054100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	37.19	37.76
TraesCS5D01G059600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	37.19	37.76
EES17365	Sorghum	plastid	39.2	36.97
Zm00001d031047_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	36.68	35.61
PGSC0003DMT400058378	Potato	plasma membrane	29.15	29.9
PGSC0003DMT400076357	Potato	extracellular	23.12	28.4
PGSC0003DMT400069270	Potato	endoplasmic reticulum, plasma membrane, vacuole	23.12	24.73
PGSC0003DMT400031372	Potato	endoplasmic reticulum, plasma membrane, vacuole	21.11	23.2
PGSC0003DMT400069269	Potato	plasma membrane	19.6	21.91
PGSC0003DMT400029522	Potato	plasma membrane	21.11	20.9
PGSC0003DMT400058342	Potato	cytosol	17.09	17.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400054615	EnsemblPlantsGene:PGSC0003DMG400021195	EntrezGene:102605769	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF120
PFAM:PF04535	PGSC:PGSC0003DMG400021195	RefSeq:XP_006353028.1	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000295C1B8
UniProt:M1BWM0	MapMan:35.1	:	:	:	:

Description

UPF0497 membrane protein 15 [Source:PGSC_GENE;Acc:PGSC0003DMG400021195]

Coordinates

chr2:+:28832138..28834159

Molecular Weight (calculated)

21698.9 Da

IEP (calculated)

9.658

GRAVY (calculated)

0.410

Length

199 amino acids

Sequence
(BLAST)

001: MAQEGNGQKT DVAKPKDYCN WVMPLLRFLA FGATISATLV MALNNQKKTF VVATMGTTPI QATLNAKFQH TPAFVFFVIA NGLCSLHNLL MLAFCFIGSK
101: YDYKGLRLYV IGILDMINVA LISGGATSAA FMGQLGRDGN SHARWNKICD KFYTFCSHGE GAIIASFIGL LLMIITTAIN IIKLKNVKNY GNNCAINIP

Best Arabidopsis Sequence Match ( AT5G44550.1 )
(BLAST)

001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP

Arabidopsis Description

CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.