Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- vacuole 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g072550.2.1 | Tomato | plasma membrane | 96.63 | 96.63 |
| PGSC0003DMT400069270 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 78.09 | 74.73 |
| PGSC0003DMT400031372 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 58.43 | 57.46 |
| VIT_17s0000g00560.t01 | Wine grape | endoplasmic reticulum | 52.25 | 45.15 |
| PGSC0003DMT400076357 | Potato | extracellular | 24.72 | 27.16 |
| PGSC0003DMT400058378 | Potato | plasma membrane | 27.53 | 25.26 |
| PGSC0003DMT400058342 | Potato | cytosol | 23.03 | 20.81 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 21.91 | 19.6 |
| PGSC0003DMT400029522 | Potato | plasma membrane | 21.91 | 19.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069269 | EnsemblPlantsGene:PGSC0003DMG400026944 | EntrezGene:102589216 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF157 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400026944 | RefSeq:XP_006347351.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002966220 | UniProt:M1CK74 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein 8 [Source:PGSC_GENE;Acc:PGSC0003DMG400026944]
Coordinates
chr6:-:53312747..53314542
Molecular Weight (calculated)
19819.7 Da
IEP (calculated)
8.927
GRAVY (calculated)
0.635
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKNMQSSP LKPYKYLLGT QILLRILATI FTLASTWIIL TSKQTVTIFG LEMDARYSYS SAFKFFAFAN MIGCAFSVLS LFLASVLGHK GLVPKNSFYM
101: FLHDLIVMAV LLAGCAAATA VGYVGKYGEM HSGWMPICEH VDKFCHKVTN SVMLSYFAVF FYLCLTIISA NQSTQIQV
101: FLHDLIVMAV LLAGCAAATA VGYVGKYGEM HSGWMPICEH VDKFCHKVTN SVMLSYFAVF FYLCLTIISA NQSTQIQV
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.