Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069269 | Potato | plasma membrane | 45.15 | 52.25 |
| PGSC0003DMT400069270 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 46.12 | 51.08 |
| Solyc06g072550.2.1 | Tomato | plasma membrane | 43.69 | 50.56 |
| Solyc06g072530.2.1 | Tomato | extracellular, plasma membrane, plastid | 44.17 | 48.92 |
| PGSC0003DMT400031372 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 37.86 | 43.09 |
| Solyc03g097720.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 37.86 | 43.09 |
| Solyc03g097730.1.1 | Tomato | extracellular, plasma membrane, vacuole | 36.41 | 42.13 |
| VIT_12s0028g03760.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 26.7 | 34.16 |
| VIT_14s0068g01400.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid, vacuole | 36.89 | 33.04 |
| VIT_05s0020g01820.t01 | Wine grape | cytosol, plasma membrane, vacuole | 25.24 | 26.67 |
| VIT_07s0104g01350.t01 | Wine grape | cytosol | 25.73 | 26.24 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 21.36 | 21.57 |
| VIT_05s0020g01830.t01 | Wine grape | cytosol | 20.87 | 20.67 |
Protein Annotations
| EntrezGene:100261186 | wikigene:100261186 | MapMan:35.1 | UniProt:A7PHN8 | InterPro:CASP/CASPL | InterPro:CASP_dom |
| ProteinID:CBI15732 | ProteinID:CBI15732.3 | EMBL:FN594950 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | EntrezGene:LOC100261186 |
| wikigene:LOC100261186 | PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF157 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0001BE0F73 | ArrayExpress:VIT_17s0000g00560 | EnsemblPlantsGene:VIT_17s0000g00560 | EnsemblPlants:VIT_17s0000g00560.t01 | RefSeq:XP_002280714 | RefSeq:XP_002280714.1 |
| SEG:seg | : | : | : | : | : |
Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:A7PHN8]
Coordinates
chr17:-:364832..366466
Molecular Weight (calculated)
23286.9 Da
IEP (calculated)
8.916
GRAVY (calculated)
0.603
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MCFQFSILYT CYLAHFGVFP RKYLVMAGIE AKFQQNPPLG THKLFLGAHI CLRILTVTAT LTAAWMMITS KQTVEVYGIQ VEAKYSYSSA FKFFSYANAI
101: ACGCSVLTLF PAFSLFYRGS TPMKFFFLFL HDLCMMSLVL AGCAAATAIG YVGRYGNNHA GWMAICDQFD EYCNRIRLSL MFSYLAFVFI LMLTIMSANK
201: SREIRV
101: ACGCSVLTLF PAFSLFYRGS TPMKFFFLFL HDLCMMSLVL AGCAAATAIG YVGRYGNNHA GWMAICDQFD EYCNRIRLSL MFSYLAFVFI LMLTIMSANK
201: SREIRV
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.