Factsheet for VIT_14s0068g01400.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06871	Soybean	endoplasmic reticulum, plasma membrane	27.39	39.13
VIT_17s0000g00560.t01	Wine grape	endoplasmic reticulum	33.04	36.89
KRG94650	Soybean	plasma membrane	29.13	34.01
AT4G25040.1	Thale cress	extracellular, plasma membrane, vacuole	24.78	33.53
Bra010476.1-P	Field mustard	extracellular, plasma membrane	23.48	32.14
CDY11050	Canola	cytosol	19.13	31.88
CDY03385	Canola	plasma membrane	23.04	31.36
CDY34336	Canola	endoplasmic reticulum, extracellular, plasma membrane	22.61	30.77
Bra013858.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	22.61	30.77
CDX92668	Canola	extracellular, plasma membrane, vacuole	21.3	28.82
Bra019194.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.3	28.82
CDY08965	Canola	extracellular, plasma membrane, vacuole	14.35	27.97
VIT_05s0020g01820.t01	Wine grape	cytosol, plasma membrane, vacuole	23.04	27.18
VIT_07s0104g01350.t01	Wine grape	cytosol	23.48	26.73
VIT_12s0028g03760.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	17.83	25.47
VIT_05s0020g01830.t01	Wine grape	cytosol	20.87	23.08
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	13.91	15.69

Protein Annotations

EntrezGene:100248101	wikigene:100248101	MapMan:35.1	EMBL:AM487000	ProteinID:CAN77740	ProteinID:CAN77740.1
InterPro:CASP/CASPL	InterPro:CASP_dom	ProteinID:CCB46992	ProteinID:CCB46992.1	EMBL:EC973652	EMBL:FN595232
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
GO:GO:0016021	GO:GO:0051536	EntrezGene:LOC100248101	wikigene:LOC100248101	PFAM:PF04535	PANTHER:PTHR11615
PANTHER:PTHR11615:SF130	SignalP:SignalP-noTM	TIGR:TC67262	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0002107E8C
ArrayExpress:VIT_14s0068g01400	EnsemblPlantsGene:VIT_14s0068g01400	EnsemblPlants:VIT_14s0068g01400.t01	unigene:Vvi.9017	RefSeq:XP_002274297	RefSeq:XP_002274297.1

Description

No Description!

Coordinates

chr14:-:25100124..25101796

Molecular Weight (calculated)

24924.2 Da

IEP (calculated)

8.854

GRAVY (calculated)

0.876

Length

230 amino acids

Sequence
(BLAST)

001: MRCLFLLIIL TCQTTPKVAK PVRPPATSEI VCFVSCCQGL SMESLEVANG KSSALGVSRE ASSPPQMGFF IAQVVLRFFT LAFTGAAIAV MVTAKETVEV
101: FSISFTVRYS YLSAFKFLVG ADAVVCGFSM LSLIFVSIFN KGKSNHYFFL YFHDLILMVL SMSACAAATA VGYVGRYGQD KAAWMAVCGN VKMFCDKALA
201: SILLSLIGFI CLFLLTIMAA RNLRVSGHLI

Best Arabidopsis Sequence Match ( AT4G25040.1 )
(BLAST)

001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY

Arabidopsis Description

CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.