Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11050 | Canola | cytosol | 67.06 | 82.61 |
| CDY34336 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 81.76 | 82.25 |
| Bra013858.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 81.76 | 82.25 |
| Bra019194.1-P | Field mustard | extracellular, plasma membrane, vacuole | 81.76 | 81.76 |
| CDY03385 | Canola | plasma membrane | 81.18 | 81.66 |
| CDX92668 | Canola | extracellular, plasma membrane, vacuole | 81.18 | 81.18 |
| Bra010476.1-P | Field mustard | extracellular, plasma membrane | 77.65 | 78.57 |
| CDY08965 | Canola | extracellular, plasma membrane, vacuole | 49.41 | 71.19 |
| AT4G03540.1 | Thale cress | extracellular, plasma membrane, vacuole | 32.94 | 34.15 |
| KRH06871 | Soybean | endoplasmic reticulum, plasma membrane | 30.59 | 32.3 |
| AT1G03700.1 | Thale cress | plasma membrane | 29.41 | 30.49 |
| KRG94650 | Soybean | plasma membrane | 32.94 | 28.43 |
| VIT_14s0068g01400.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid, vacuole | 33.53 | 24.78 |
| AT4G15620.1 | Thale cress | plasma membrane | 26.47 | 23.68 |
| AT4G15630.1 | Thale cress | plasma membrane | 25.29 | 22.63 |
| AT5G44550.1 | Thale cress | plasma membrane | 24.12 | 20.81 |
| AT4G15610.1 | Thale cress | plasma membrane | 22.94 | 20.21 |
| AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 22.94 | 19.8 |
| AT3G06390.1 | Thale cress | plasma membrane | 22.35 | 19.1 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828607 | ProteinID:AEE84995.1 | ArrayExpress:AT4G25040 | EnsemblPlantsGene:AT4G25040 | RefSeq:AT4G25040 |
| TAIR:AT4G25040 | RefSeq:AT4G25040-TAIR-G | EnsemblPlants:AT4G25040.1 | TAIR:AT4G25040.1 | EMBL:AY086627 | Unigene:At.32300 |
| ProteinID:CAB36746.1 | ProteinID:CAB79413.1 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_194234.1 | PFAM:PF04535 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PO:PO:0025195 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF157 | UniProt:Q9M0L3 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI000009C614 | SEG:seg | : | : | : | : |
Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
Coordinates
chr4:+:12868169..12869495
Molecular Weight (calculated)
18670.1 Da
IEP (calculated)
9.561
GRAVY (calculated)
0.748
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.