CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, vacuole

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019194.1-P	Field mustard	extracellular, plasma membrane, vacuole	99.41	99.41
CDY11050	Canola	cytosol	80.59	99.28
CDY34336	Canola	endoplasmic reticulum, extracellular, plasma membrane	84.12	84.62
CDY03385	Canola	plasma membrane	84.12	84.62
AT4G25040.1	Thale cress	extracellular, plasma membrane, vacuole	81.18	81.18
CDY08965	Canola	extracellular, plasma membrane, vacuole	45.88	66.1
CDY21972	Canola	extracellular, plasma membrane	29.41	30.49
CDY48566	Canola	extracellular, plasma membrane	28.82	29.88
KRH06871	Soybean	endoplasmic reticulum, plasma membrane	27.06	28.57
CDY70062	Canola	extracellular	18.82	26.67
CDX89875	Canola	extracellular, plasma membrane, vacuole	25.29	26.22
CDY18177	Canola	extracellular, plasma membrane, vacuole	25.29	26.22
KRG94650	Soybean	plasma membrane	29.41	25.38
CDY49491	Canola	plasma membrane	25.29	21.61
CDY09075	Canola	plasma membrane	24.12	21.58
CDY22743	Canola	plasma membrane	24.12	21.58
VIT_14s0068g01400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid, vacuole	28.82	21.3
CDY49020	Canola	plasma membrane	24.71	21.11
CDY14930	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.12	20.71
CDY63706	Canola	endoplasmic reticulum, plasma membrane, plastid	24.12	20.71
CDY09749	Canola	plasma membrane	22.35	20.0
CDX90578	Canola	plasma membrane	21.76	19.47
CDY09750	Canola	plasma membrane	21.76	19.17
CDX90580	Canola	plasma membrane	21.76	19.17
CDX76458	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	22.35	19.1
CDY24696	Canola	endoplasmic reticulum, plasma membrane, vacuole	22.94	19.02
CDX76993	Canola	plasma membrane	22.94	19.02
CDY31439	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	21.76	18.59
CDY05260	Canola	plasma membrane	22.35	18.54

Protein Annotations

EnsemblPlants:CDX92668	EnsemblPlantsGene:GSBRNA2T00154479001	GO:A0A078DZG2	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF157	PFAM:PF04535	ProteinID:CDX92668	ProteinID:CDX92668.1	SEG:seg	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EAFBB3	MapMan:35.1	:	:	:

Description

BnaC07g39260D

Coordinates

chrLK031873:+:256234..257518

Molecular Weight (calculated)

18696.0 Da

IEP (calculated)

9.003

GRAVY (calculated)

0.680

Length

170 amino acids

Sequence
(BLAST)

001: MMGANDERRT PLMNLGVQVS MRVLAIGTAL ASMGLTITNH EVASVYGINF EAKYDYSSAF RYLVYAEIAI AGMTLFTLVW AYLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAMSDGYIGK YGNTHAGWLP ICGYVHNYCN RVTLSLALAF ASFLLLFILT VLTASAARHF

Best Arabidopsis Sequence Match ( AT4G25040.1 )
(BLAST)

001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY

Arabidopsis Description

CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.