CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	extracellular, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34336	Canola	endoplasmic reticulum, extracellular, plasma membrane	98.22	98.22
CDY11050	Canola	cytosol	70.41	86.23
CDX92668	Canola	extracellular, plasma membrane, vacuole	84.62	84.12
AT4G25040.1	Thale cress	extracellular, plasma membrane, vacuole	81.66	81.18
CDY08965	Canola	extracellular, plasma membrane, vacuole	50.89	72.88
CDY21972	Canola	extracellular, plasma membrane	30.77	31.71
CDY48566	Canola	extracellular, plasma membrane	30.18	31.1
KRH06871	Soybean	endoplasmic reticulum, plasma membrane	27.81	29.19
CDX89875	Canola	extracellular, plasma membrane, vacuole	27.81	28.66
CDY18177	Canola	extracellular, plasma membrane, vacuole	27.81	28.66
CDY70062	Canola	extracellular	19.53	27.5
KRG94650	Soybean	plasma membrane	30.18	25.89
CDY49491	Canola	plasma membrane	27.81	23.62
CDY49020	Canola	plasma membrane	27.22	23.12
VIT_14s0068g01400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid, vacuole	31.36	23.04
CDY63706	Canola	endoplasmic reticulum, plasma membrane, plastid	26.63	22.73
CDY14930	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.04	22.22
CDX76458	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	25.44	21.61
CDY31439	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	24.85	21.11
CDY09750	Canola	plasma membrane	23.67	20.73
CDX90580	Canola	plasma membrane	23.67	20.73
CDY22743	Canola	plasma membrane	23.08	20.53
CDY09075	Canola	plasma membrane	23.08	20.53
CDY24696	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.85	20.49
CDY05260	Canola	plasma membrane	24.85	20.49
CDX76993	Canola	plasma membrane	24.85	20.49
CDY09749	Canola	plasma membrane	21.89	19.47
CDX90578	Canola	plasma membrane	21.3	18.95

Protein Annotations

EnsemblPlants:CDY03385	EnsemblPlantsGene:GSBRNA2T00116019001	GO:A0A078EN18	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF157	PFAM:PF04535	ProteinID:CDY03385	ProteinID:CDY03385.1	SEG:seg	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EDDF7F	MapMan:35.1	:	:	:

Description

BnaC01g16970D

Coordinates

chrLK031943:-:105039..106363

Molecular Weight (calculated)

18185.2 Da

IEP (calculated)

9.114

GRAVY (calculated)

0.654

Length

169 amino acids

Sequence
(BLAST)

001: MGDNGGKRTP SMNLAVQVSM RVLAIGTALA SMGLMITNHE VASVYGIAFE AKYSDSSAFR YLVYADIAIS ALTLFTLVWA CLAVRKRGLV FALFFFDLLA
101: TLTAMSAFSA ATSEGYIGKY GNTHAGWLPI CGYVHGYCNR GTLSLAFSFA SFLLLFILTV LNASAARHH

Best Arabidopsis Sequence Match ( AT4G25040.1 )
(BLAST)

001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY

Arabidopsis Description

CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.