Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44550.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039516.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 98.48 | 98.48 |
| CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 97.98 | 97.98 |
| AT5G44550.1 | Thale cress | plasma membrane | 87.88 | 88.32 |
| CDY49491 | Canola | plasma membrane | 87.88 | 87.44 |
| CDY49020 | Canola | plasma membrane | 87.88 | 87.44 |
| CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 70.2 | 69.85 |
| CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 67.68 | 67.34 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 50.0 | 52.38 |
| Solyc02g069730.2.1 | Tomato | plasma membrane | 48.99 | 49.74 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 48.99 | 48.74 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 49.49 | 48.04 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 48.48 | 47.76 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 45.45 | 46.39 |
| Os12t0610800-01 | Rice | plasma membrane | 38.38 | 38.97 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 45.45 | 38.63 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 39.39 | 38.42 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 35.35 | 35.71 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 35.35 | 35.71 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 34.85 | 35.2 |
| EES17365 | Sorghum | plastid | 37.37 | 35.07 |
| CDY21972 | Canola | extracellular, plasma membrane | 28.79 | 34.76 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 35.86 | 34.63 |
| CDY48566 | Canola | extracellular, plasma membrane | 28.28 | 34.15 |
| CDX89875 | Canola | extracellular, plasma membrane, vacuole | 26.77 | 32.32 |
| CDY18177 | Canola | extracellular, plasma membrane, vacuole | 26.77 | 32.32 |
| CDX90580 | Canola | plasma membrane | 28.28 | 29.02 |
| CDY09750 | Canola | plasma membrane | 27.78 | 28.5 |
| CDY70062 | Canola | extracellular | 16.67 | 27.5 |
| CDY03385 | Canola | plasma membrane | 22.73 | 26.63 |
| CDX90578 | Canola | plasma membrane | 25.25 | 26.32 |
| CDY09749 | Canola | plasma membrane | 25.25 | 26.32 |
| CDY22743 | Canola | plasma membrane | 24.75 | 25.79 |
| CDY34336 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.72 | 25.44 |
| CDY09075 | Canola | plasma membrane | 24.24 | 25.26 |
| CDX76993 | Canola | plasma membrane | 25.25 | 24.39 |
| CDY05260 | Canola | plasma membrane | 25.25 | 24.39 |
| CDX92668 | Canola | extracellular, plasma membrane, vacuole | 20.71 | 24.12 |
| CDY11050 | Canola | cytosol | 16.67 | 23.91 |
| CDY24696 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 24.75 | 23.9 |
| CDY08965 | Canola | extracellular, plasma membrane, vacuole | 13.13 | 22.03 |
Protein Annotations
| EnsemblPlants:CDY63706 | EnsemblPlantsGene:GSBRNA2T00039558001 | GO:A0A078JEL7 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 |
| PFAM:PF04535 | ProteinID:CDY63706 | ProteinID:CDY63706.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0004EB4E3C | UniProt:A0A078JEL7 | MapMan:35.1 | : | : | : |
Description
BnaC02g47460DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEL7]
Coordinates
chrLK034340:-:5559..6850
Molecular Weight (calculated)
20838.9 Da
IEP (calculated)
10.541
GRAVY (calculated)
0.710
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSKLVLAA TSTKSCKVLL GLRVLAFSAT LSAAIVMGLN KETKTFVVGN VGNTPVKATF TAKFQHTPAF VFFVVANAMV SFHNMLMIAV HLFGGKMEFT
101: SFRLLSVAIL DMLNVTLISA AANAAAFISE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVVLML IISAISISRL AHPNKCSSST AATPSVVP
101: SFRLLSVAIL DMLNVTLISA AANAAAFISE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVVLML IISAISISRL AHPNKCSSST AATPSVVP
001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
Arabidopsis Description
CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.