Factsheet for GSMUA_Achr7P08030_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G054100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.71	54.59
TraesCS5D01G059600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	52.22	54.08
Os12t0610800-01	Rice	plasma membrane	51.23	53.33
TraesCS5A01G049000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	51.23	53.06
EES17365	Sorghum	plastid	53.69	51.66
Zm00001d031047_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	50.25	49.76
KRH43078	Soybean	peroxisome, plasma membrane, plastid, vacuole	46.31	48.45
KRH37705	Soybean	extracellular, plasma membrane, plastid, vacuole	43.84	47.09
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	45.32	45.1
Solyc02g069730.2.1	Tomato	plasma membrane	42.36	44.1
Bra033751.1-P	Field mustard	plasma membrane	40.89	43.23
KRH12746	Soybean	cytosol, plasma membrane, vacuole	42.36	42.79
CDY49491	Canola	plasma membrane	41.38	42.21
AT5G44550.1	Thale cress	plasma membrane	40.89	42.13
CDY49020	Canola	plasma membrane	40.89	41.71
PGSC0003DMT400054615	Potato	plasma membrane	40.89	41.71
KRH59207	Soybean	extracellular, plasma membrane, vacuole	46.8	40.77
CDX76458	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	39.41	40.2
AT4G20390.1	Thale cress	extracellular, mitochondrion, plasma membrane, vacuole	38.92	40.1
CDY63706	Canola	endoplasmic reticulum, plasma membrane, plastid	38.42	39.39
CDY31439	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	38.42	39.2
CDY14930	Canola	endoplasmic reticulum, plasma membrane, vacuole	37.93	38.89
Bra039516.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	37.93	38.89
GSMUA_Achr6P13870_001	Banana	extracellular, plasma membrane	30.05	38.12
GSMUA_Achr3P03240_001	Banana	plasma membrane	28.57	29.59
GSMUA_Achr3P23880_001	Banana	golgi, plasma membrane, vacuole	26.6	27.41
GSMUA_Achr9P30950_001	Banana	plasma membrane	26.11	25.6
GSMUA_Achr5P00430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	21.18	22.51
GSMUA_Achr9P30940_001	Banana	endoplasmic reticulum, plasma membrane	20.69	22.34
GSMUA_Achr1P14720_001	Banana	vacuole	20.69	21.76
GSMUA_Achr5P00440_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	18.72	18.91

Protein Annotations

EnsemblPlants:GSMUA_Achr7P08030_001	EnsemblPlants:GSMUA_Achr7T08030_001	EnsemblPlantsGene:GSMUA_Achr7G08030_001	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF120
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000295703F	UniProt:M0TFP3
MapMan:35.1	:	:	:	:	:

Description

UPF0497 membrane protein Os12g0610800 [Source:GMGC_GENE;Acc:GSMUA_Achr7G08030_001]

Coordinates

chr7:+:5994203..5995399

Molecular Weight (calculated)

21785.8 Da

IEP (calculated)

10.180

GRAVY (calculated)

0.394

Length

203 amino acids

Sequence
(BLAST)

001: MATENGKQAE AESRQSQPKS KLLLSLRLAA VLATATATVV MALNKQSTRM AVAVVGTSPI LQTFTAAFQQ TPAFVYFVIA NAIASLYNLL VLLLRPFLKA
101: KPHDILVHLL DEVIFALVAT GAAAAASMAE LGKNGNVHAR WNPICDRFEA FCIRGGLALM ASFAGALLLL LMNAFSTFTL HKSKPITAPS KATREAASRE
201: EEW

Best Arabidopsis Sequence Match ( AT5G44550.1 )
(BLAST)

001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP

Arabidopsis Description

CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.