Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P03240_001 | Banana | plasma membrane | 80.0 | 65.31 |
| TraesCS3B01G190800.1 | Wheat | mitochondrion | 56.88 | 58.33 |
| TraesCS3D01G167400.1 | Wheat | plasma membrane | 56.25 | 57.69 |
| TraesCS3A01G160200.1 | Wheat | plasma membrane | 56.25 | 57.69 |
| HORVU3Hr1G032350.1 | Barley | plasma membrane | 55.0 | 56.41 |
| KRH50041 | Soybean | plasma membrane | 54.38 | 54.38 |
| Zm00001d010038_P001 | Maize | plasma membrane | 54.38 | 53.37 |
| VIT_12s0028g03760.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 52.5 | 52.17 |
| EES19280 | Sorghum | extracellular, plasma membrane, vacuole | 51.88 | 51.23 |
| TraesCS7D01G130400.1 | Wheat | plasma membrane | 51.88 | 51.23 |
| TraesCS7A01G131000.1 | Wheat | plasma membrane | 51.88 | 51.23 |
| TraesCS7B01G031400.1 | Wheat | plasma membrane | 51.25 | 50.62 |
| HORVU7Hr1G027410.1 | Barley | extracellular, plasma membrane | 51.25 | 50.62 |
| Os05t0245300-01 | Rice | mitochondrion, plasma membrane | 49.38 | 48.77 |
| CDY48566 | Canola | extracellular, plasma membrane | 49.38 | 48.17 |
| CDY21972 | Canola | extracellular, plasma membrane | 49.38 | 48.17 |
| Bra034215.1-P | Field mustard | extracellular, plasma membrane | 49.38 | 48.17 |
| KRH25574 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 48.75 | 47.85 |
| KRH55963 | Soybean | extracellular | 48.12 | 47.24 |
| AT4G03540.1 | Thale cress | extracellular, plasma membrane, vacuole | 47.5 | 46.34 |
| Solyc02g078250.2.1 | Tomato | extracellular | 46.88 | 46.3 |
| CDY18177 | Canola | extracellular, plasma membrane, vacuole | 46.88 | 45.73 |
| CDX89875 | Canola | extracellular, plasma membrane, vacuole | 46.88 | 45.73 |
| AT1G03700.1 | Thale cress | plasma membrane | 45.62 | 44.51 |
| Os01t0237000-01 | Rice | golgi, plasma membrane, vacuole | 45.0 | 44.44 |
| PGSC0003DMT400076357 | Potato | extracellular | 45.0 | 44.44 |
| CDY70062 | Canola | extracellular | 33.12 | 44.17 |
| Bra015256.1-P | Field mustard | extracellular, plasma membrane, vacuole | 46.88 | 42.86 |
| KRH72716 | Soybean | extracellular | 34.38 | 39.01 |
| KRH17069 | Soybean | extracellular, plasma membrane, vacuole | 40.62 | 38.92 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 38.12 | 30.05 |
| GSMUA_Achr9P30950_001 | Banana | plasma membrane | 35.0 | 27.05 |
| GSMUA_Achr5P00430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 30.62 | 25.65 |
| GSMUA_Achr9P30940_001 | Banana | endoplasmic reticulum, plasma membrane | 28.12 | 23.94 |
| GSMUA_Achr3P23880_001 | Banana | golgi, plasma membrane, vacuole | 29.38 | 23.86 |
| GSMUA_Achr1P14720_001 | Banana | vacuole | 28.75 | 23.83 |
| GSMUA_Achr5P00440_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 27.5 | 21.89 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P13870_001 | EnsemblPlants:GSMUA_Achr6T13870_001 | EnsemblPlantsGene:GSMUA_Achr6G13870_001 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF218 |
| PFAM:PF04535 | SEG:seg | SignalP:SignalP-TM | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI0002947F71 |
| UniProt:M0T6T5 | MapMan:35.1 | : | : | : | : |
Description
UPF0497 membrane protein 9 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13870_001]
Coordinates
chr6:-:9202099..9202727
Molecular Weight (calculated)
16873.1 Da
IEP (calculated)
8.376
GRAVY (calculated)
1.012
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTSRLCSL LLRLLAAAAT LCATVVMATS RDSTTIFGLT LDAKFQYTPS FEFFVVANAV GCGYTLLVLF VPPTTSLSRL VIVFDVTVAM LLTAATAAAG
101: AMAQVGKKGN SHAGWMPICG QVPSFCDHVT GALICAFVGV IAYFLIVLHT IYTLLSPLFP
101: AMAQVGKKGN SHAGWMPICG QVPSFCDHVT GALICAFVGV IAYFLIVLHT IYTLLSPLFP
001: MVKLTQRLGG LVLRFAAFCA ALGAVIAMIT SRERSSFFVI SLVAKYSDLA AFKYFVIANA IVTVYSFLVL FLPKESLLWK FVVVLDLMVT MLLTSSLSAA
101: VAVAQVGKRG NANAGWLPIC GQVPRFCDQI TGALIAGLVA LVLYVFLLIF SIHHVVDPFL LRKS
101: VAVAQVGKRG NANAGWLPIC GQVPRFCDQI TGALIAGLVA LVLYVFLLIF SIHHVVDPFL LRKS
Arabidopsis Description
CASP-like protein 1C2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR57]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.