Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- plasma membrane 4
- golgi 3
- extracellular 2
- vacuole 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P00440_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 57.98 | 54.23 |
| GSMUA_Achr1P14720_001 | Banana | vacuole | 50.0 | 48.7 |
| GSMUA_Achr3P23880_001 | Banana | golgi, plasma membrane, vacuole | 38.3 | 36.55 |
| Bra012775.1-P | Field mustard | plasma membrane | 34.57 | 34.21 |
| CDX90578 | Canola | plasma membrane | 34.57 | 34.21 |
| CDY09749 | Canola | plasma membrane | 34.57 | 34.21 |
| VIT_05s0020g01820.t01 | Wine grape | cytosol, plasma membrane, vacuole | 34.57 | 33.33 |
| AT4G15630.1 | Thale cress | plasma membrane | 33.51 | 33.16 |
| Solyc01g067330.2.1 | Tomato | plasma membrane | 33.51 | 33.16 |
| PGSC0003DMT400058378 | Potato | plasma membrane | 33.51 | 32.47 |
| AT4G15620.1 | Thale cress | plasma membrane | 32.45 | 32.11 |
| KRH02204 | Soybean | cytosol, plasma membrane, vacuole | 31.91 | 32.09 |
| KRH50920 | Soybean | cytosol, plasma membrane, vacuole | 31.91 | 31.91 |
| CDY22743 | Canola | plasma membrane | 31.91 | 31.58 |
| CDY09075 | Canola | plasma membrane | 31.91 | 31.58 |
| Bra038078.1-P | Field mustard | plasma membrane | 31.91 | 31.09 |
| VIT_07s0104g01350.t01 | Wine grape | cytosol | 32.45 | 30.2 |
| KRH11251 | Soybean | plasma membrane | 32.45 | 30.2 |
| KRH68112 | Soybean | plasma membrane | 30.85 | 30.05 |
| KRG96380 | Soybean | plasma membrane | 30.85 | 29.59 |
| Solyc09g074550.2.1 | Tomato | extracellular | 24.47 | 28.57 |
| GSMUA_Achr6P13870_001 | Banana | extracellular, plasma membrane | 23.94 | 28.12 |
| PGSC0003DMT400029522 | Potato | plasma membrane | 27.66 | 25.87 |
| GSMUA_Achr5P00430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 23.94 | 23.56 |
| GSMUA_Achr9P30950_001 | Banana | plasma membrane | 23.4 | 21.26 |
| GSMUA_Achr3P03240_001 | Banana | plasma membrane | 21.81 | 20.92 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 22.34 | 20.69 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P30940_001 | EnsemblPlants:GSMUA_Achr9T30940_001 | EnsemblPlantsGene:GSMUA_Achr9G30940_001 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF150 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI0002964F35 | UniProt:M0U501 |
| MapMan:35.1 | : | : | : | : | : |
Description
UPF0497 membrane protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G30940_001]
Coordinates
chr9:-:34027637..34028311
Molecular Weight (calculated)
19725.7 Da
IEP (calculated)
10.371
GRAVY (calculated)
1.032
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSPPAYNVG VPAPVSWMRL LSYILRISAI VLTLVATIVM GTARGTVTVL FVNPLTGFLS TVAGSTKSTN SAAFVYFIVA NTLVSFYSVV SLALLIASKA
101: GKSIMLLPFS IGDLVMVALL FSGNGAATAI SVVLEHGQQR LARWSEICHA VGGFCARVNA AIVLSMVASL AYVLLVVLGL LGLRKSNY
101: GKSIMLLPFS IGDLVMVALL FSGNGAATAI SVVLEHGQQR LARWSEICHA VGGFCARVNA AIVLSMVASL AYVLLVVLGL LGLRKSNY
001: MEHEGKNNMN GMEMEKGKRE LGSRKGVELT MRVLALILTM AAATVLGVAK QTKVVSIKLI PTLPPLDITT TAKASYLSAF VYNISVNAIA CGYTAISIAI
101: LMISRGRRSK KLLMVVLLGD LVMVALLFSG TGAASAIGLM GLHGNKHVMW KKVCGVFGKF CHRAAPSLPL TLLAAVVFMF LVVLDAIKLP
101: LMISRGRRSK KLLMVVLLGD LVMVALLFSG TGAASAIGLM GLHGNKHVMW KKVCGVFGKF CHRAAPSLPL TLLAAVVFMF LVVLDAIKLP
Arabidopsis Description
CASP-like protein 1E2 [Source:UniProtKB/Swiss-Prot;Acc:O23413]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.