Factsheet for PGSC0003DMT400029522

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 2
cytosol 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074550.2.1	Tomato	extracellular	75.12	93.79
PGSC0003DMT400058378	Potato	plasma membrane	40.3	41.75
VIT_07s0104g01350.t01	Wine grape	cytosol	41.29	41.09
KRG96380	Soybean	plasma membrane	38.81	39.8
AT4G15620.1	Thale cress	plasma membrane	37.31	39.47
Bra012775.1-P	Field mustard	plasma membrane	37.31	39.47
CDX90578	Canola	plasma membrane	37.31	39.47
CDY09749	Canola	plasma membrane	36.82	38.95
KRH68112	Soybean	plasma membrane	37.31	38.86
AT4G15630.1	Thale cress	plasma membrane	35.32	37.37
CDY22743	Canola	plasma membrane	34.83	36.84
CDY09075	Canola	plasma membrane	34.33	36.32
Bra038078.1-P	Field mustard	plasma membrane	34.83	36.27
GSMUA_Achr3P23880_001	Banana	golgi, plasma membrane, vacuole	34.83	35.53
TraesCS7D01G381200.1	Wheat	plastid	31.84	31.84
TraesCS7B01G287500.1	Wheat	plastid	31.34	31.82
HORVU7Hr1G091440.2	Barley	plastid	31.34	31.5
TraesCS7A01G384700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid	30.85	30.69
Zm00001d040807_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane, plastid	32.84	30.0
EES02949	Sorghum	plastid	32.34	29.28
GSMUA_Achr1P14720_001	Banana	vacuole	26.87	27.98
GSMUA_Achr9P30940_001	Banana	endoplasmic reticulum, plasma membrane	25.87	27.66
Os01t0363300-01	Rice	golgi, plasma membrane, plastid	29.35	27.44
GSMUA_Achr5P00440_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	25.87	25.87
PGSC0003DMT400076357	Potato	extracellular	20.4	25.31
PGSC0003DMT400031372	Potato	endoplasmic reticulum, plasma membrane, vacuole	20.4	22.65
PGSC0003DMT400058342	Potato	cytosol	21.89	22.34
PGSC0003DMT400069269	Potato	plasma membrane	19.4	21.91
PGSC0003DMT400054615	Potato	plasma membrane	20.9	21.11
PGSC0003DMT400069270	Potato	endoplasmic reticulum, plasma membrane, vacuole	17.41	18.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400029522	EnsemblPlantsGene:PGSC0003DMG400011355	EntrezGene:102588625	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF150
PFAM:PF04535	PGSC:PGSC0003DMG400011355	RefSeq:XP_006359447.1	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI000296F28E	UniProt:M1ASY5	MapMan:35.1	:	:	:

Description

UPF0497 membrane protein 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400011355]

Coordinates

chr9:+:52020855..52023195

Molecular Weight (calculated)

21839.9 Da

IEP (calculated)

8.854

GRAVY (calculated)

0.544

Length

201 amino acids

Sequence
(BLAST)

001: MKTLETCNGA SGSNEGKNRC DEEMVKCRRY EMILRIMGLI FTLVAAIVAG SNKDTESVAI SLVDGLPPLH LTLTAKWSYM SSTVYFVAVN AVACAYAAIS
101: MAFIALIGGS RGRNWKGSIL VVALDLTMVA LLFSANGASA SIGLIALNGN SHTQWHKVCY AFKRYCIQGG AALVISMFGS FFFFCIVLLF TYNLHRTTLN
201: Y

Best Arabidopsis Sequence Match ( AT4G15620.1 )
(BLAST)

001: MEHEGKNNMN GMEMEKGKRE LGSRKGVELT MRVLALILTM AAATVLGVAK QTKVVSIKLI PTLPPLDITT TAKASYLSAF VYNISVNAIA CGYTAISIAI
101: LMISRGRRSK KLLMVVLLGD LVMVALLFSG TGAASAIGLM GLHGNKHVMW KKVCGVFGKF CHRAAPSLPL TLLAAVVFMF LVVLDAIKLP

Arabidopsis Description

CASP-like protein 1E2 [Source:UniProtKB/Swiss-Prot;Acc:O23413]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.