Factsheet for GSMUA_Achr5P00440_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
plasma membrane 3
golgi 2
extracellular 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30940_001	Banana	endoplasmic reticulum, plasma membrane	54.23	57.98
GSMUA_Achr1P14720_001	Banana	vacuole	55.22	57.51
GSMUA_Achr3P23880_001	Banana	golgi, plasma membrane, vacuole	35.82	36.55
VIT_05s0020g01820.t01	Wine grape	cytosol, plasma membrane, vacuole	32.84	33.85
KRH11251	Soybean	plasma membrane	32.34	32.18
PGSC0003DMT400058378	Potato	plasma membrane	30.85	31.96
VIT_07s0104g01350.t01	Wine grape	cytosol	31.84	31.68
Solyc01g067330.2.1	Tomato	plasma membrane	29.35	31.05
KRH02204	Soybean	cytosol, plasma membrane, vacuole	28.86	31.02
AT4G15630.1	Thale cress	plasma membrane	28.86	30.53
CDY09749	Canola	plasma membrane	28.86	30.53
KRH50920	Soybean	cytosol, plasma membrane, vacuole	28.36	30.32
Bra012775.1-P	Field mustard	plasma membrane	28.36	30.0
CDX90578	Canola	plasma membrane	28.36	30.0
KRH68112	Soybean	plasma membrane	28.36	29.53
CDY09075	Canola	plasma membrane	27.86	29.47
AT4G15620.1	Thale cress	plasma membrane	27.86	29.47
CDY22743	Canola	plasma membrane	27.86	29.47
Solyc09g074550.2.1	Tomato	extracellular	23.38	29.19
Bra038078.1-P	Field mustard	plasma membrane	27.86	29.02
KRG96380	Soybean	plasma membrane	27.86	28.57
GSMUA_Achr6P13870_001	Banana	extracellular, plasma membrane	21.89	27.5
PGSC0003DMT400029522	Potato	plasma membrane	25.87	25.87
GSMUA_Achr5P00430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	21.39	22.51
GSMUA_Achr9P30950_001	Banana	plasma membrane	21.89	21.26
GSMUA_Achr3P03240_001	Banana	plasma membrane	19.9	20.41
GSMUA_Achr7P08030_001	Banana	plasma membrane	18.91	18.72

Protein Annotations

EnsemblPlants:GSMUA_Achr5P00440_001	EnsemblPlants:GSMUA_Achr5T00440_001	EnsemblPlantsGene:GSMUA_Achr5G00440_001	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF150
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000296F83F	UniProt:M0SUH3
MapMan:35.1	:	:	:	:	:

Description

UPF0497 membrane protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G00440_001]

Coordinates

chr5:+:277666..278553

Molecular Weight (calculated)

21020.0 Da

IEP (calculated)

9.804

GRAVY (calculated)

0.920

Length

201 amino acids

Sequence
(BLAST)

001: MESQFRTGFD VSQGAGGRAS KFGDVVAPPS STLLPGIILR IVAIVLTFIS AVVMGAARQT TTVTGIDAET ALLTSITVTV KSTYSAAYVY FVVANVLVFF
101: YSVVSLVLSM VNKARLTSMS LPFSIADLLM VVLLFSSNGA AAAISVVAEK GQQNLAGWDK ICNLVGGLCA RVNAAIVLSI LASVAYVILV VFGMANLRRS
201: Q

Best Arabidopsis Sequence Match ( AT4G15630.1 )
(BLAST)

001: MEHESKNKVD GMEMEKGKKE SGSRKGLELT MRVLALVLTM VAATVLGVAK QTKVVPIKLI PTLPPLNVST TAKASYLSAF VYNISANAIA CGYTAISIVI
101: VMISKGKRSK SLLMAVLIGD LMMVALLFSS TGAAGAIGLM GRHGNKHVMW KKVCGVFGKF CNQAAVSVAI TLIASVVFML LVVLDALKLP

Arabidopsis Description

CASP-like protein 1E1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Z1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.