Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067330.2.1 | Tomato | plasma membrane | 91.75 | 93.68 |
| AT4G15630.1 | Thale cress | plasma membrane | 47.94 | 48.95 |
| Bra012775.1-P | Field mustard | plasma membrane | 45.88 | 46.84 |
| CDX90578 | Canola | plasma membrane | 45.88 | 46.84 |
| CDY09749 | Canola | plasma membrane | 45.36 | 46.32 |
| CDY22743 | Canola | plasma membrane | 45.36 | 46.32 |
| CDY09075 | Canola | plasma membrane | 44.85 | 45.79 |
| Bra038078.1-P | Field mustard | plasma membrane | 45.36 | 45.6 |
| AT4G15620.1 | Thale cress | plasma membrane | 42.27 | 43.16 |
| PGSC0003DMT400029522 | Potato | plasma membrane | 41.75 | 40.3 |
| GSMUA_Achr3P23880_001 | Banana | golgi, plasma membrane, vacuole | 39.69 | 39.09 |
| TraesCS7D01G381200.1 | Wheat | plastid | 38.14 | 36.82 |
| HORVU7Hr1G091440.2 | Barley | plastid | 37.63 | 36.5 |
| TraesCS7B01G287500.1 | Wheat | plastid | 36.6 | 35.86 |
| TraesCS7A01G384700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid | 36.6 | 35.15 |
| GSMUA_Achr9P30940_001 | Banana | endoplasmic reticulum, plasma membrane | 32.47 | 33.51 |
| GSMUA_Achr1P14720_001 | Banana | vacuole | 32.99 | 33.16 |
| PGSC0003DMT400076357 | Potato | extracellular | 27.32 | 32.72 |
| Zm00001d040807_P001 | Maize | cytosol, endoplasmic reticulum, plasma membrane, plastid | 35.57 | 31.36 |
| EES02949 | Sorghum | plastid | 35.57 | 31.08 |
| GSMUA_Achr5P00440_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 31.96 | 30.85 |
| Os01t0363300-01 | Rice | golgi, plasma membrane, plastid | 34.02 | 30.7 |
| PGSC0003DMT400069270 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 29.38 | 30.65 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 29.9 | 29.15 |
| PGSC0003DMT400058342 | Potato | cytosol | 29.38 | 28.93 |
| PGSC0003DMT400031372 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 25.77 | 27.62 |
| PGSC0003DMT400069269 | Potato | plasma membrane | 25.26 | 27.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058378 | EnsemblPlantsGene:PGSC0003DMG400022677 | EntrezGene:102601676 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF150 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400022677 | RefSeq:XP_006342777.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI000296E6B6 | UniProt:M1C2K8 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400022677]
Coordinates
chr1:+:58665389..58667487
Molecular Weight (calculated)
20890.2 Da
IEP (calculated)
10.238
GRAVY (calculated)
0.814
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: METESYTNGG GVAKEIGIAN KQTIRWNDFV LRFLAFVLTL VAAIVLGVSK QNELVPVQLV PTLPPINVPA SAKWSHMSAF VYFVIVNAIA CAYAVISLVL
101: SLANRGKAKG LSLTIILFDL IMMALLYSSV GAAAAVGLIG YKGNTHVRWN KVCDVFGKFC GQVAAAIAIS LVGSILFLLL VLFAMLNLHK NRRH
101: SLANRGKAKG LSLTIILFDL IMMALLYSSV GAAAAVGLIG YKGNTHVRWN KVCDVFGKFC GQVAAAIAIS LVGSILFLLL VLFAMLNLHK NRRH
001: MEHESKNKVD GMEMEKGKKE SGSRKGLELT MRVLALVLTM VAATVLGVAK QTKVVPIKLI PTLPPLNVST TAKASYLSAF VYNISANAIA CGYTAISIVI
101: VMISKGKRSK SLLMAVLIGD LMMVALLFSS TGAAGAIGLM GRHGNKHVMW KKVCGVFGKF CNQAAVSVAI TLIASVVFML LVVLDALKLP
101: VMISKGKRSK SLLMAVLIGD LMMVALLFSS TGAAGAIGLM GRHGNKHVMW KKVCGVFGKF CNQAAVSVAI TLIASVVFML LVVLDALKLP
Arabidopsis Description
CASP-like protein 1E1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Z1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.