Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g097720.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 94.48 | 94.48 |
| PGSC0003DMT400069269 | Potato | plasma membrane | 57.46 | 58.43 |
| PGSC0003DMT400069270 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 56.91 | 55.38 |
| VIT_17s0000g00560.t01 | Wine grape | endoplasmic reticulum | 43.09 | 37.86 |
| PGSC0003DMT400076357 | Potato | extracellular | 27.62 | 30.86 |
| PGSC0003DMT400058378 | Potato | plasma membrane | 27.62 | 25.77 |
| PGSC0003DMT400058342 | Potato | cytosol | 24.86 | 22.84 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 23.2 | 21.11 |
| PGSC0003DMT400029522 | Potato | plasma membrane | 22.65 | 20.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031372 | EnsemblPlantsGene:PGSC0003DMG400012025 | EntrezGene:102603695 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF157 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400012025 | RefSeq:XP_006363994.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI000296CB39 | UniProt:M1AVK5 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein 8 [Source:PGSC_GENE;Acc:PGSC0003DMG400012025]
Coordinates
chr3:-:45543126..45545826
Molecular Weight (calculated)
20417.3 Da
IEP (calculated)
9.528
GRAVY (calculated)
0.679
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYFAIKSIE TPSVKSEKHF IFAQILLRIL ATAFTLTAAC ITFKSTQTLI IFNVETDARY TYSPALKFFV YANVIGCAFS FFSLFLASAF GRTNLHPHKY
101: FYLFIHDMIM MALLLSACSA AATIGYVGKY GQIRSGWMPI CDSVTKFCHK MTASVIFSIF GVIFYLCLTI ISAYQSRKIQ V
101: FYLFIHDMIM MALLLSACSA AATIGYVGKY GQIRSGWMPI CDSVTKFCHK MTASVIFSIF GVIFYLCLTI ISAYQSRKIQ V
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.