Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031372 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 94.48 | 94.48 |
| Solyc06g072550.2.1 | Tomato | plasma membrane | 55.25 | 56.18 |
| Solyc06g072530.2.1 | Tomato | extracellular, plasma membrane, plastid | 54.7 | 53.23 |
| Solyc03g097730.1.1 | Tomato | extracellular, plasma membrane, vacuole | 48.07 | 48.88 |
| VIT_17s0000g00560.t01 | Wine grape | endoplasmic reticulum | 43.09 | 37.86 |
| Solyc02g078250.2.1 | Tomato | extracellular | 27.07 | 30.25 |
| Solyc01g067330.2.1 | Tomato | plasma membrane | 28.18 | 26.84 |
| Solyc09g074550.2.1 | Tomato | extracellular | 22.65 | 25.47 |
| Solyc01g067300.2.1 | Tomato | cytosol | 24.31 | 22.45 |
| Solyc02g069730.2.1 | Tomato | plasma membrane | 23.2 | 21.54 |
Protein Annotations
| EnsemblPlants:Solyc03g097720.2.1 | EnsemblPlantsGene:Solyc03g097720.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | InterPro:CASP/CASPL | InterPro:CASP_dom |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF157 | PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI000276857F | UniProt:K4BJI9 | MapMan:35.1 | : | : | : |
Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4BJI9]
Coordinates
chr3:+:60069466..60071791
Molecular Weight (calculated)
20417.3 Da
IEP (calculated)
9.219
GRAVY (calculated)
0.646
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHFAIKSIE TPSMKSEKHF IFAQILLRIL ATAFTLTAAC ITFKSAQTLS VFNVETDARY TYSPALKFFV YANVIGCAFS FFSLFLASIF GCTNLHKHKY
101: FYLFIHDMIM MDLLLSACSA AATIGYVGKY GQIRSGWMPI CDSVTKFCHK MTASVIFSIF GVIFYLCLTI LSAYQSRKIQ V
101: FYLFIHDMIM MDLLLSACSA AATIGYVGKY GQIRSGWMPI CDSVTKFCHK MTASVIFSIF GVIFYLCLTI LSAYQSRKIQ V
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.