Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44550.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054615 | Potato | plasma membrane | 92.82 | 90.95 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 53.33 | 55.03 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 56.41 | 53.92 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 54.87 | 53.23 |
| AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 52.31 | 51.78 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 50.77 | 51.03 |
| AT5G44550.1 | Thale cress | plasma membrane | 50.77 | 50.25 |
| Bra033751.1-P | Field mustard | plasma membrane | 49.23 | 50.0 |
| CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 50.77 | 49.75 |
| CDY49491 | Canola | plasma membrane | 50.26 | 49.25 |
| CDY63706 | Canola | endoplasmic reticulum, plasma membrane, plastid | 49.74 | 48.99 |
| CDY49020 | Canola | plasma membrane | 49.74 | 48.74 |
| Bra039516.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 49.23 | 48.48 |
| CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 49.23 | 48.48 |
| CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 49.23 | 48.24 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 52.31 | 43.78 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 44.1 | 42.36 |
| Os12t0610800-01 | Rice | plasma membrane | 40.0 | 40.0 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 38.97 | 38.78 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 38.97 | 38.78 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 38.46 | 38.27 |
| EES17365 | Sorghum | plastid | 39.49 | 36.49 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 37.44 | 35.61 |
| Solyc01g067330.2.1 | Tomato | plasma membrane | 30.26 | 31.05 |
| Solyc02g078250.2.1 | Tomato | extracellular | 24.62 | 29.63 |
| Solyc06g072530.2.1 | Tomato | extracellular, plasma membrane, plastid | 23.08 | 24.19 |
| Solyc09g074550.2.1 | Tomato | extracellular | 19.49 | 23.6 |
| Solyc06g072550.2.1 | Tomato | plasma membrane | 21.54 | 23.6 |
| Solyc03g097720.2.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 21.54 | 23.2 |
| Solyc01g067300.2.1 | Tomato | cytosol | 19.49 | 19.39 |
| Solyc03g097730.1.1 | Tomato | extracellular, plasma membrane, vacuole | 16.92 | 18.54 |
Protein Annotations
| MapMan:35.1 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | UniProt:K4B7V5 |
| PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 | EnsemblPlantsGene:Solyc02g069730.2 | EnsemblPlants:Solyc02g069730.2.1 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI00027682A0 | SEG:seg | : | : | : |
Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4B7V5]
Coordinates
chr2:+:39544965..39546525
Molecular Weight (calculated)
21279.5 Da
IEP (calculated)
10.115
GRAVY (calculated)
0.519
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQEGNGQKI DVAKSKVYYN WVMPLLRLLA FGATISATLV MALNNQKKTI VVATIGTTPI QATLNAKFQH TPAFVFFVIA NGLVSLHNLL MLAFCFIGNK
101: YDYKGLRFYV IGILDMINVA LISGGASSAA FMGQLGRNGN SHARWNKICD KFYTFCNHGE GAIIASFIGL LLMIITTAIN IIKLKNINNC AINIP
101: YDYKGLRFYV IGILDMINVA LISGGASSAA FMGQLGRNGN SHARWNKICD KFYTFCNHGE GAIIASFIGL LLMIITTAIN IIKLKNINNC AINIP
001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
Arabidopsis Description
CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.