Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44550.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT5G44550.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49020 | Canola | plasma membrane | 99.0 | 99.0 |
| AT5G44550.1 | Thale cress | plasma membrane | 88.44 | 89.34 |
| CDY63706 | Canola | endoplasmic reticulum, plasma membrane, plastid | 87.44 | 87.88 |
| CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 86.93 | 87.37 |
| CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 70.85 | 70.85 |
| CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 68.34 | 68.34 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 51.26 | 53.97 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 52.26 | 50.98 |
| Solyc02g069730.2.1 | Tomato | plasma membrane | 49.25 | 50.26 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 49.25 | 49.25 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 49.25 | 48.76 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 44.72 | 45.88 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 42.21 | 41.38 |
| Os12t0610800-01 | Rice | plasma membrane | 39.7 | 40.51 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 45.73 | 39.06 |
| EES17365 | Sorghum | plastid | 40.2 | 37.91 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 37.19 | 37.76 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 37.19 | 37.76 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 36.68 | 37.24 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 38.19 | 37.07 |
| CDY21972 | Canola | extracellular, plasma membrane | 30.15 | 36.59 |
| CDY48566 | Canola | extracellular, plasma membrane | 29.65 | 35.98 |
| CDX89875 | Canola | extracellular, plasma membrane, vacuole | 27.64 | 33.54 |
| CDY18177 | Canola | extracellular, plasma membrane, vacuole | 27.64 | 33.54 |
| CDY70062 | Canola | extracellular | 18.09 | 30.0 |
| CDX90580 | Canola | plasma membrane | 27.64 | 28.5 |
| CDY09750 | Canola | plasma membrane | 27.14 | 27.98 |
| CDY03385 | Canola | plasma membrane | 23.62 | 27.81 |
| CDY11050 | Canola | cytosol | 18.59 | 26.81 |
| CDY34336 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 22.61 | 26.63 |
| CDX76993 | Canola | plasma membrane | 27.14 | 26.34 |
| CDY05260 | Canola | plasma membrane | 27.14 | 26.34 |
| CDX90578 | Canola | plasma membrane | 25.13 | 26.32 |
| CDY09749 | Canola | plasma membrane | 25.13 | 26.32 |
| CDY24696 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.63 | 25.85 |
| CDX92668 | Canola | extracellular, plasma membrane, vacuole | 21.61 | 25.29 |
| CDY22743 | Canola | plasma membrane | 24.12 | 25.26 |
| CDY09075 | Canola | plasma membrane | 23.62 | 24.74 |
| CDY08965 | Canola | extracellular, plasma membrane, vacuole | 13.07 | 22.03 |
Protein Annotations
| EnsemblPlants:CDY49491 | EnsemblPlantsGene:GSBRNA2T00093153001 | GO:A0A078IHM6 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 |
| PFAM:PF04535 | ProteinID:CDY49491 | ProteinID:CDY49491.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0004EC0A6A | UniProt:A0A078IHM6 | MapMan:35.1 | : | : | : |
Description
BnaC07g18080DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHM6]
Coordinates
chrLK032836:+:79143..80656
Molecular Weight (calculated)
20963.1 Da
IEP (calculated)
10.703
GRAVY (calculated)
0.724
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAKLVLAA TSGKSSKILL GLRVLAFLAT LSAAIVMGLN KETKTFVVGN VGNTPIKATF TAKFQHTPAF VYFVVANAMV SFHNLLMIAL QLFGRKTELT
101: GFRLLSIAIL DMLNVTLLSA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVVLML IISAVSISRL VQPNKCSIST TAASTSVVP
101: GFRLLSIAIL DMLNVTLLSA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVVLML IISAVSISRL VQPNKCSIST TAASTSVVP
001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
Arabidopsis Description
CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.