Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 74.87 | 74.49 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 73.85 | 73.47 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 73.33 | 72.96 |
| EES17365 | Sorghum | plastid | 69.74 | 64.45 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 61.54 | 58.54 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 53.33 | 51.23 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 41.54 | 41.75 |
| CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 41.03 | 40.2 |
| Bra033751.1-P | Field mustard | plasma membrane | 39.49 | 40.1 |
| Solyc02g069730.2.1 | Tomato | plasma membrane | 40.0 | 40.0 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 41.54 | 39.71 |
| CDY49491 | Canola | plasma membrane | 40.51 | 39.7 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 38.46 | 39.68 |
| AT5G44550.1 | Thale cress | plasma membrane | 40.0 | 39.59 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 40.0 | 38.81 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 39.49 | 38.69 |
| CDY49020 | Canola | plasma membrane | 39.49 | 38.69 |
| AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 38.97 | 38.58 |
| CDY63706 | Canola | endoplasmic reticulum, plasma membrane, plastid | 38.97 | 38.38 |
| CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 38.97 | 38.38 |
| Bra039516.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 38.97 | 38.38 |
| CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 38.46 | 37.69 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 42.56 | 35.62 |
| Os01t0237000-01 | Rice | golgi, plasma membrane, vacuole | 27.18 | 32.72 |
| Os05t0245300-01 | Rice | mitochondrion, plasma membrane | 25.64 | 30.86 |
| Os01t0363300-01 | Rice | golgi, plasma membrane, plastid | 27.18 | 24.65 |
| Os07t0442900-01 | Rice | plasma membrane | 21.54 | 20.29 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4352765 | ProteinID:ABA99368.1 | EMBL:AK073789 | ProteinID:BAF30268.1 | ProteinID:BAT18033.1 |
| InterPro:CASP/CASPL | InterPro:CASP_dom | ProteinID:EEE53590.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | EnsemblPlantsGene:Os12g0610800 |
| EnsemblPlants:Os12t0610800-01 | PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 | UniProt:Q0ILZ7 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI0000DD9F66 | RefSeq:XP_015618988.1 | SEG:seg | : | : |
Description
Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os12t0610800-01);Similar to UPF0497 membrane protein 3. (Os12t0610800-02)
Coordinates
chr12:-:25807692..25809339
Molecular Weight (calculated)
20765.8 Da
IEP (calculated)
10.827
GRAVY (calculated)
0.471
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLEKGKKPS EQAAACRIMQ VKDKLITLQP VVRACVFLAT AVAAVIMGLN KQSYTTVVAI VGTRPVTQTF TAKFKDTPAF VFFVIANAIA SGYNLMVLVT
101: RRILQRRAQS LSVHLLDMVI LTLLATGSAT AASMAQLGKN GNLHARWNPI CDKFGSFCNH GGIALVSSFI GVALMLALNL LSAAANSPRS NVTGQ
101: RRILQRRAQS LSVHLLDMVI LTLLATGSAT AASMAQLGKN GNLHARWNPI CDKFGSFCNH GGIALVSSFI GVALMLALNL LSAAANSPRS NVTGQ
001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
Arabidopsis Description
CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.