Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G167400.1 | Wheat | plasma membrane | 54.94 | 57.05 |
| TraesCS3A01G160200.1 | Wheat | plasma membrane | 54.32 | 56.41 |
| TraesCS3B01G190800.1 | Wheat | mitochondrion | 53.7 | 55.77 |
| HORVU3Hr1G032350.1 | Barley | plasma membrane | 53.09 | 55.13 |
| Os05t0245300-01 | Rice | mitochondrion, plasma membrane | 45.06 | 45.06 |
| GSMUA_Achr6P13870_001 | Banana | extracellular, plasma membrane | 44.44 | 45.0 |
| PGSC0003DMT400076357 | Potato | extracellular | 41.98 | 41.98 |
| Solyc02g078250.2.1 | Tomato | extracellular | 41.36 | 41.36 |
| VIT_12s0028g03760.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 40.74 | 40.99 |
| Bra034215.1-P | Field mustard | extracellular, plasma membrane | 39.51 | 39.02 |
| CDY48566 | Canola | extracellular, plasma membrane | 39.51 | 39.02 |
| CDY21972 | Canola | extracellular, plasma membrane | 38.89 | 38.41 |
| AT4G03540.1 | Thale cress | extracellular, plasma membrane, vacuole | 38.27 | 37.8 |
| CDY70062 | Canola | extracellular | 27.78 | 37.5 |
| KRH50041 | Soybean | plasma membrane | 36.42 | 36.88 |
| GSMUA_Achr3P03240_001 | Banana | plasma membrane | 43.83 | 36.22 |
| CDY18177 | Canola | extracellular, plasma membrane, vacuole | 35.19 | 34.76 |
| CDX89875 | Canola | extracellular, plasma membrane, vacuole | 35.19 | 34.76 |
| AT1G03700.1 | Thale cress | plasma membrane | 35.19 | 34.76 |
| Bra015256.1-P | Field mustard | extracellular, plasma membrane, vacuole | 35.19 | 32.57 |
| KRH25574 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 32.1 | 31.9 |
| KRH55963 | Soybean | extracellular | 32.1 | 31.9 |
| KRH17069 | Soybean | extracellular, plasma membrane, vacuole | 32.72 | 31.74 |
| KRH72716 | Soybean | extracellular | 26.54 | 30.5 |
| Os12t0610800-01 | Rice | plasma membrane | 32.72 | 27.18 |
| Os01t0363300-01 | Rice | golgi, plasma membrane, plastid | 29.63 | 22.33 |
| Os07t0442900-01 | Rice | plasma membrane | 25.93 | 20.29 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4327789 | EMBL:AK062426 | ProteinID:BAA92922.1 | ProteinID:BAF04446.1 | ProteinID:BAS71236.1 |
| InterPro:CASP/CASPL | InterPro:CASP_dom | ProteinID:EAZ11186.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | EnsemblPlantsGene:Os01g0237000 |
| EnsemblPlants:Os01t0237000-01 | PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF218 | UniProt:Q9LI17 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI000009D00C | RefSeq:XP_015634431.1 | SEG:seg | : | : |
Description
Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os01t0237000-01)
Coordinates
chr1:+:7588191..7589529
Molecular Weight (calculated)
16980.4 Da
IEP (calculated)
9.177
GRAVY (calculated)
1.112
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSAKARWIV AVVLRVAAAG AAAVAAVLMA MSHDEVIVYG MEVQAKFRYT PSLVFFVAAN AAVSACSLVV LLVPSSTSKL AARLLLMADV VLGMVLAGAF
101: AAAGAMAELG KNGNSHAGWI AICVQVPLFC DRVRSALVAG SATIVLYYLM LMYSIYTLPM FP
101: AAAGAMAELG KNGNSHAGWI AICVQVPLFC DRVRSALVAG SATIVLYYLM LMYSIYTLPM FP
001: MVKLTQRLGG LVLRFAAFCA ALGAVIAMIT SRERSSFFVI SLVAKYSDLA AFKYFVIANA IVTVYSFLVL FLPKESLLWK FVVVLDLMVT MLLTSSLSAA
101: VAVAQVGKRG NANAGWLPIC GQVPRFCDQI TGALIAGLVA LVLYVFLLIF SIHHVVDPFL LRKS
101: VAVAQVGKRG NANAGWLPIC GQVPRFCDQI TGALIAGLVA LVLYVFLLIF SIHHVVDPFL LRKS
Arabidopsis Description
CASP-like protein 1C2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR57]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.