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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 6
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, vacuole
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89875 Canola extracellular, plasma membrane, vacuole 93.14 99.39
CDY18177 Canola extracellular, plasma membrane, vacuole 93.14 99.39
AT1G03700.1 Thale cress plasma membrane 89.71 95.73
CDY70062 Canola extracellular 63.43 92.5
Bra034215.1-P Field mustard extracellular, plasma membrane 76.0 81.1
KRH25574 Soybean endoplasmic reticulum, plasma membrane, vacuole 56.57 60.74
KRH55963 Soybean extracellular 54.29 58.28
VIT_12s0028g03760.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 49.71 54.04
KRH17069 Soybean extracellular, plasma membrane, vacuole 45.14 47.31
GSMUA_Achr6P13870_001 Banana extracellular, plasma membrane 42.86 46.88
EES19280 Sorghum extracellular, plasma membrane, vacuole 42.29 45.68
KRH72716 Soybean extracellular 36.0 44.68
TraesCS7D01G130400.1 Wheat plasma membrane 41.14 44.44
TraesCS7A01G131000.1 Wheat plasma membrane 41.14 44.44
TraesCS7B01G031400.1 Wheat plasma membrane 40.57 43.83
Zm00001d010038_P001 Maize plasma membrane 40.0 42.94
HORVU7Hr1G027410.1 Barley extracellular, plasma membrane 39.43 42.59
Os05t0245300-01 Rice mitochondrion, plasma membrane 38.29 41.36
TraesCS3D01G167400.1 Wheat plasma membrane 36.0 40.38
TraesCS3B01G190800.1 Wheat mitochondrion 36.0 40.38
TraesCS3A01G160200.1 Wheat plasma membrane 36.0 40.38
GSMUA_Achr3P03240_001 Banana plasma membrane 44.0 39.29
HORVU3Hr1G032350.1 Barley plasma membrane 34.86 39.1
Os01t0237000-01 Rice golgi, plasma membrane, vacuole 32.57 35.19
Bra010476.1-P Field mustard extracellular, plasma membrane 28.0 29.17
Bra033751.1-P Field mustard plasma membrane 31.43 28.65
Bra039516.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 30.86 27.27
Bra013858.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 26.29 27.22
Bra019194.1-P Field mustard extracellular, plasma membrane, vacuole 24.57 25.29
Bra012777.1-P Field mustard plasma membrane 27.43 24.87
Bra012775.1-P Field mustard plasma membrane 25.14 23.16
Bra038078.1-P Field mustard plasma membrane 25.14 22.8
Bra020752.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 25.14 21.46
Protein Annotations
EnsemblPlants:Bra015256.1EnsemblPlants:Bra015256.1-PEnsemblPlantsGene:Bra015256GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF159
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI0002544462UniProt:M4DFI3
MapMan:35.1:::::
Description
AT1G03700 (E=4e-034) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G03540.1); Has 260 Blast hits to 260 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA10:-:2856182..2856969
Molecular Weight (calculated)
19001.1 Da
IEP (calculated)
10.516
GRAVY (calculated)
1.091
Length
175 amino acids
Sequence
(BLAST)
001: MVKVTQRLGG LVLRFAAFCA ALGAVIAMVT SRERSSFFVL SLVAKYSDLA AFKYFVIANA IVSVYSFLVL FLPKESLLWK FVVVLDLFFL VNGKLTVKMV
101: TMLLTSSLSA AAAVAQVGKR GNANAGWLPI CGQVPRFCDQ ITGALIAGLV ALILYVFLLI FSIHSVVDPF LLRKS
Best Arabidopsis Sequence Match ( AT1G03700.1 )
(BLAST)
001: MVKLTQRLGG LVLRFAAFCA ALGAVIAMIT SRERSSFFVI SLVAKYSDLA AFKYFVIANA IVTVYSFLVL FLPKESLLWK FVVVLDLMVT MLLTSSLSAA
101: VAVAQVGKRG NANAGWLPIC GQVPRFCDQI TGALIAGLVA LVLYVFLLIF SIHHVVDPFL LRKS
Arabidopsis Description
CASP-like protein 1C2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR57]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.