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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • extracellular 3
  • plasma membrane 4
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08965 Canola extracellular, plasma membrane, vacuole 60.71 86.44
Bra013858.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 84.52 84.02
Bra019194.1-P Field mustard extracellular, plasma membrane, vacuole 80.95 80.0
AT4G25040.1 Thale cress extracellular, plasma membrane, vacuole 78.57 77.65
Bra034215.1-P Field mustard extracellular, plasma membrane 32.14 32.93
KRH06871 Soybean endoplasmic reticulum, plasma membrane 28.57 29.81
Bra015256.1-P Field mustard extracellular, plasma membrane, vacuole 29.17 28.0
KRG94650 Soybean plasma membrane 31.55 26.9
VIT_14s0068g01400.t01 Wine grape endoplasmic reticulum, plasma membrane, plastid, vacuole 32.14 23.48
Bra020752.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 27.38 22.44
Bra033751.1-P Field mustard plasma membrane 25.0 21.88
Bra012777.1-P Field mustard plasma membrane 25.0 21.76
Bra038078.1-P Field mustard plasma membrane 25.0 21.76
Bra039516.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 25.6 21.72
Bra012775.1-P Field mustard plasma membrane 22.62 20.0
Protein Annotations
EnsemblPlants:Bra010476.1EnsemblPlants:Bra010476.1-PEnsemblPlantsGene:Bra010476GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF157
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI0002545A4AUniProt:M4D1X6
MapMan:35.1:::::
Description
AT4G25040 (E=1e-058) | integral membrane family protein
Coordinates
chrA08:-:14723202..14724177
Molecular Weight (calculated)
18281.6 Da
IEP (calculated)
9.828
GRAVY (calculated)
0.783
Length
168 amino acids
Sequence
(BLAST)
001: MGDSVGKRTL MNLKVQVSMR VLTLGAALAS MGLMITNREV ASVYGIAFEA KYSDSSAFRY LVFAYIAISA VTLFTLAWAC LAVRRGGFIF ALFFFDLLMT
101: LTALSAFSAA MSEGYIGKYG NTHAGWLPIC GYVHNYCNRT TLSLALSFVS FLLLFVLTVL TASAARRS
Best Arabidopsis Sequence Match ( AT4G25040.1 )
(BLAST)
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.