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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48566 Canola extracellular, plasma membrane 100.0 100.0
CDY21972 Canola extracellular, plasma membrane 99.39 99.39
AT4G03540.1 Thale cress extracellular, plasma membrane, vacuole 95.12 95.12
Bra015256.1-P Field mustard extracellular, plasma membrane, vacuole 81.1 76.0
KRH25574 Soybean endoplasmic reticulum, plasma membrane, vacuole 65.24 65.64
KRH55963 Soybean extracellular 62.2 62.58
VIT_12s0028g03760.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 59.15 60.25
KRH17069 Soybean extracellular, plasma membrane, vacuole 53.05 52.1
TraesCS7D01G130400.1 Wheat plasma membrane 49.39 50.0
EES19280 Sorghum extracellular, plasma membrane, vacuole 49.39 50.0
TraesCS7B01G031400.1 Wheat plasma membrane 48.78 49.38
TraesCS7A01G131000.1 Wheat plasma membrane 48.78 49.38
GSMUA_Achr6P13870_001 Banana extracellular, plasma membrane 48.17 49.38
HORVU7Hr1G027410.1 Barley extracellular, plasma membrane 47.56 48.15
Zm00001d010038_P001 Maize plasma membrane 47.56 47.85
KRH72716 Soybean extracellular 40.85 47.52
Os05t0245300-01 Rice mitochondrion, plasma membrane 45.73 46.3
TraesCS3A01G160200.1 Wheat plasma membrane 43.29 45.51
TraesCS3D01G167400.1 Wheat plasma membrane 43.29 45.51
TraesCS3B01G190800.1 Wheat mitochondrion 42.68 44.87
HORVU3Hr1G032350.1 Barley plasma membrane 42.07 44.23
Os01t0237000-01 Rice golgi, plasma membrane, vacuole 39.02 39.51
GSMUA_Achr3P03240_001 Banana plasma membrane 45.73 38.27
Bra010476.1-P Field mustard extracellular, plasma membrane 32.93 32.14
Bra033751.1-P Field mustard plasma membrane 35.98 30.73
Bra013858.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 30.49 29.59
Bra019194.1-P Field mustard extracellular, plasma membrane, vacuole 29.88 28.82
Bra039516.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 34.76 28.79
Bra012777.1-P Field mustard plasma membrane 32.93 27.98
Bra012775.1-P Field mustard plasma membrane 27.44 23.68
Bra038078.1-P Field mustard plasma membrane 27.44 23.32
Bra020752.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 28.05 22.44
Protein Annotations
EnsemblPlants:Bra034215.1EnsemblPlants:Bra034215.1-PEnsemblPlantsGene:Bra034215GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF159
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI0002543A00UniProt:M4EZH2
MapMan:35.1:::::
Description
AT4G03540 (E=9e-049) | integral membrane family protein
Coordinates
chrA01:-:26893107..26894205
Molecular Weight (calculated)
17665.4 Da
IEP (calculated)
10.084
GRAVY (calculated)
1.057
Length
164 amino acids
Sequence
(BLAST)
001: MAKLTKRIGA LVLRLAAFGA ALAALIVMVT SRERASFFAV SLEAKYTDMA AFKYFVIANA VVSVYSFLVL FLPKESLLWK FVVVLDLVMT MLLTSSISAA
101: LAVAQVGKKG NANAGWLPIC GQVPKFCDQV TGALIAGFVA LVLYVLLLLY SLHSVVDPFL LQKS
Best Arabidopsis Sequence Match ( AT4G03540.1 )
(BLAST)
001: MVKLTKRIGG LVLRLAAFGA ALAALIVMIT SRERASFLAI SLEAKYTDMA AFKYFVIANA VVSVYSFLVL FLPKESLLWK FVVVLDLVMT MLLTSSLSAA
101: LAVAQVGKKG NANAGWLPIC GQVPKFCDQI TGALIAGFVA LVLYVLLLLY SLHAVVDPFL LQKS
Arabidopsis Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V2N5]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.