Factsheet for Bra039516.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44550.1	Bra002403.1-P	AT5G22290.1	21798944
AT5G44550.1	Bra006619.1-P	AT5G22290.1	21798944
AT5G44550.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14930	Canola	endoplasmic reticulum, plasma membrane, vacuole	99.49	99.49
CDY63706	Canola	endoplasmic reticulum, plasma membrane, plastid	98.48	98.48
Bra033751.1-P	Field mustard	plasma membrane	85.35	88.02
AT5G44550.1	Thale cress	plasma membrane	87.37	87.82
KRH37705	Soybean	extracellular, plasma membrane, plastid, vacuole	50.0	52.38
Solyc02g069730.2.1	Tomato	plasma membrane	48.48	49.23
PGSC0003DMT400054615	Potato	plasma membrane	48.48	48.24
KRH12746	Soybean	cytosol, plasma membrane, vacuole	48.48	47.76
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	48.99	47.55
KRH43078	Soybean	peroxisome, plasma membrane, plastid, vacuole	45.45	46.39
Os12t0610800-01	Rice	plasma membrane	38.38	38.97
KRH59207	Soybean	extracellular, plasma membrane, vacuole	45.45	38.63
GSMUA_Achr7P08030_001	Banana	plasma membrane	38.89	37.93
TraesCS5A01G049000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	35.35	35.71
TraesCS5D01G059600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	35.35	35.71
TraesCS5B01G054100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	34.85	35.2
EES17365	Sorghum	plastid	37.37	35.07
Bra034215.1-P	Field mustard	extracellular, plasma membrane	28.79	34.76
Zm00001d031047_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	35.86	34.63
Bra015256.1-P	Field mustard	extracellular, plasma membrane, vacuole	27.27	30.86
Bra012777.1-P	Field mustard	plasma membrane	27.78	28.5
Bra012775.1-P	Field mustard	plasma membrane	24.75	25.79
Bra010476.1-P	Field mustard	extracellular, plasma membrane	21.72	25.6
Bra013858.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	21.72	25.44
Bra038078.1-P	Field mustard	plasma membrane	24.75	25.39
Bra019194.1-P	Field mustard	extracellular, plasma membrane, vacuole	20.71	24.12
Bra020752.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	24.75	23.9

Protein Annotations

EnsemblPlants:Bra039516.1	EnsemblPlants:Bra039516.1-P	EnsemblPlantsGene:Bra039516	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF120
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000253E9AC	UniProt:M4FEJ5
MapMan:35.1	:	:	:	:	:

Description

AT5G44550 (E=3e-081) | integral membrane family protein

Coordinates

chrScaffold000167:-:109596..112580

Molecular Weight (calculated)

20844.8 Da

IEP (calculated)

10.262

GRAVY (calculated)

0.709

Length

198 amino acids

Sequence
(BLAST)

001: MAVSKLVLAA TSTKSCKVLL GLRVLAFSAT LSAAIVMGLN KETKTFVVGN VGNTPVKATF TAKFQHTPAF VFFVVANAMV SFHNMLMIAV HLFGGEMEFT
101: SFRLLSVAIL DMLNVTLISA AANAAAFISE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVVLML IISAISISRL AQPNKCSSST AATPSVLP

Best Arabidopsis Sequence Match ( AT5G44550.1 )
(BLAST)

001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP

Arabidopsis Description

CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.