Factsheet for Bra020752.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24696	Canola	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
CDX76993	Canola	plasma membrane	97.07	97.07
CDY05260	Canola	plasma membrane	96.1	96.1
AT3G06390.1	Thale cress	plasma membrane	83.41	85.93
KRH50921	Soybean	plasma membrane	43.41	46.11
KRH21024	Soybean	cytosol, plasma membrane, vacuole	41.95	45.5
KRH02202	Soybean	golgi, plasma membrane, vacuole	41.95	44.56
Bra012777.1-P	Field mustard	plasma membrane	40.98	43.52
PGSC0003DMT400058342	Potato	cytosol	40.49	42.13
TraesCS1D01G248200.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	37.56	40.74
GSMUA_Achr5P00430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	37.56	40.31
VIT_05s0020g01830.t01	Wine grape	cytosol	40.49	39.9
Solyc01g067300.2.1	Tomato	cytosol	38.05	39.8
TraesCS1A01G248700.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	36.59	39.68
GSMUA_Achr9P30950_001	Banana	plasma membrane	39.51	39.13
Zm00001d005158_P001	Maize	extracellular	37.56	37.93
Os07t0442900-01	Rice	plasma membrane	37.07	36.72
Zm00001d019457_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	34.63	36.22
TraesCS1B01G259400.1	Wheat	plasma membrane	33.17	35.98
HORVU1Hr1G062380.3	Barley	plastid	37.56	35.48
EER98393	Sorghum	endoplasmic reticulum, plasma membrane, plastid, vacuole	33.66	34.33
Bra033751.1-P	Field mustard	plasma membrane	26.34	28.12
Bra034215.1-P	Field mustard	extracellular, plasma membrane	22.44	28.05
Bra010476.1-P	Field mustard	extracellular, plasma membrane	22.44	27.38
Bra012775.1-P	Field mustard	plasma membrane	23.9	25.79
Bra015256.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.46	25.14
Bra038078.1-P	Field mustard	plasma membrane	23.41	24.87
Bra013858.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	20.49	24.85
Bra039516.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	23.9	24.75
Bra019194.1-P	Field mustard	extracellular, plasma membrane, vacuole	19.02	22.94

Protein Annotations

EnsemblPlants:Bra020752.1	EnsemblPlants:Bra020752.1-P	EnsemblPlantsGene:Bra020752	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF150
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0002545F67	UniProt:M4DW58
MapMan:35.1	:	:	:	:	:

Description

AT3G06390 (E=3e-067) | integral membrane family protein

Coordinates

chrA02:-:23283673..23284486

Molecular Weight (calculated)

21833.6 Da

IEP (calculated)

4.378

GRAVY (calculated)

0.648

Length

205 amino acids

Sequence
(BLAST)

001: MASTENPDPE TGKSEPLPAS TEALTPPAAP SSASSFLDCR KIDIIIRVLL FSATLTALIV MVTSDQTEMT QLPGAPSPAP VSAEFSDSPA FIYFVVALVV
101: AGFYALISTI ISISLLLRPE FVAQFSIYIS SFDMVVLGIL ASATGTAGGV AYIALKGNEE IGWNKICNVY DKFCRYIATS LALSLFASLL LLVLSICSMW
201: KRTTT

Best Arabidopsis Sequence Match ( AT3G06390.1 )
(BLAST)

001: MASTENPDPE TGKSEPIPAS ATPPPSSAAS FLDCRKIDII TRVLLFSATL TALIVMVTSD QTEMTQLPGV SSPAPVSAEF NDSPAFIYFV VALVVASFYA
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT

Arabidopsis Description

CASP-like protein 1D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.