Factsheet for VIT_05s0020g01830.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50921	Soybean	plasma membrane	53.37	57.51
KRH02202	Soybean	golgi, plasma membrane, vacuole	52.88	56.99
GSMUA_Achr5P00430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	51.92	56.54
GSMUA_Achr9P30950_001	Banana	plasma membrane	56.25	56.52
KRH21024	Soybean	cytosol, plasma membrane, vacuole	50.0	55.03
Solyc01g067300.2.1	Tomato	cytosol	51.44	54.59
PGSC0003DMT400058342	Potato	cytosol	48.56	51.27
CDY09750	Canola	plasma membrane	46.63	50.26
Bra012777.1-P	Field mustard	plasma membrane	46.15	49.74
CDX90580	Canola	plasma membrane	46.15	49.74
AT4G15610.1	Thale cress	plasma membrane	45.19	48.7
TraesCS1D01G248200.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	40.87	44.97
TraesCS1A01G248700.1	Wheat	endoplasmic reticulum, plasma membrane, plastid, vacuole	39.9	43.92
AT3G06390.1	Thale cress	plasma membrane	41.83	43.72
Zm00001d019457_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	40.87	43.37
EER98393	Sorghum	endoplasmic reticulum, plasma membrane, plastid, vacuole	41.83	43.28
Os07t0442900-01	Rice	plasma membrane	42.31	42.51
TraesCS1B01G259400.1	Wheat	plasma membrane	37.5	41.27
CDX76993	Canola	plasma membrane	40.38	40.98
CDY05260	Canola	plasma membrane	40.38	40.98
Bra020752.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	39.9	40.49
CDY24696	Canola	endoplasmic reticulum, plasma membrane, vacuole	39.9	40.49
Zm00001d005158_P001	Maize	extracellular	39.42	40.39
HORVU1Hr1G062380.3	Barley	plastid	38.46	36.87
VIT_12s0028g03760.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	22.12	28.57
VIT_07s0104g01350.t01	Wine grape	cytosol	27.4	28.22
VIT_05s0020g01820.t01	Wine grape	cytosol, plasma membrane, vacuole	25.0	26.67
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	24.52	25.0
VIT_17s0000g00560.t01	Wine grape	endoplasmic reticulum	20.67	20.87
VIT_14s0068g01400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid, vacuole	23.08	20.87

Protein Annotations

EntrezGene:100246027	wikigene:100246027	MapMan:35.1	UniProt:A7NW79	InterPro:CASP/CASPL	InterPro:CASP_dom
ProteinID:CCB50343	ProteinID:CCB50343.1	EMBL:EC964015	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	GO:GO:0051536
EntrezGene:LOC100246027	wikigene:LOC100246027	PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF150	SUPFAM:SSF101447
TIGR:TC62294	TIGR:TC65158	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI00019832B3	ArrayExpress:VIT_05s0020g01830
EnsemblPlantsGene:VIT_05s0020g01830	EnsemblPlants:VIT_05s0020g01830.t01	RefSeq:XP_002276229	RefSeq:XP_002276229.1	SEG:seg	:

Description

CASP-like protein 1D1 [Source:UniProtKB/Swiss-Prot;Acc:A7NW79]

Coordinates

chr5:+:3549467..3551839

Molecular Weight (calculated)

21783.1 Da

IEP (calculated)

9.851

GRAVY (calculated)

0.642

Length

208 amino acids

Sequence
(BLAST)

001: MSSVDTEKPA PPPLETEAPP PPPPPPPPPP PPPPPPAGYS ALDVVLRILL LGSAVASVVV MVTSVQTKLI AVAGVPVLVS NKAKFQNSPA FIYFVAALSV
101: VGLYSIITTL ASFIFISKPS CSTKTILHLA IWDVLMLGLA ASATGTAGGV AYVGLKGNSH VGWNKVCNTY DKFCRHVGGS IAVALFASIL LVLLVWLSLF
201: TLYSRIRK

Best Arabidopsis Sequence Match ( AT4G15610.1 )
(BLAST)

001: MGYETKSTLD TERSTAPGTG TTTKSCSMTQ VVLRFVLFAA TLTSIVVMVT SKQTKNIFLP GTPIRIPAAE FTNSPALIYF VVALSVACFY SIVSTFVTVS
101: AFKKHSCSAV LLLNLAIMDA VMVGIVASAT GAGGGVAYLG LKGNKEVRWG KICHIYDKFC RHVGGAIAVS LFASVVLLLL SIISVLSLYK KIR

Arabidopsis Description

CASP-like protein 1D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE29]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.