Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24696 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 85.93 | 83.41 |
| CDY05260 | Canola | plasma membrane | 85.93 | 83.41 |
| CDX76993 | Canola | plasma membrane | 85.93 | 83.41 |
| Bra020752.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 85.93 | 83.41 |
| AT4G15610.1 | Thale cress | plasma membrane | 46.73 | 48.19 |
| KRH50921 | Soybean | plasma membrane | 45.73 | 47.15 |
| KRH21024 | Soybean | cytosol, plasma membrane, vacuole | 44.22 | 46.56 |
| KRH02202 | Soybean | golgi, plasma membrane, vacuole | 44.22 | 45.6 |
| PGSC0003DMT400058342 | Potato | cytosol | 44.22 | 44.67 |
| TraesCS1D01G248200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 41.71 | 43.92 |
| TraesCS1A01G248700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 40.7 | 42.86 |
| GSMUA_Achr5P00430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 40.7 | 42.41 |
| Solyc01g067300.2.1 | Tomato | cytosol | 41.21 | 41.84 |
| VIT_05s0020g01830.t01 | Wine grape | cytosol | 43.72 | 41.83 |
| GSMUA_Achr9P30950_001 | Banana | plasma membrane | 42.71 | 41.06 |
| TraesCS1B01G259400.1 | Wheat | plasma membrane | 37.19 | 39.15 |
| Zm00001d005158_P001 | Maize | extracellular | 39.7 | 38.92 |
| Zm00001d019457_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid, vacuole | 38.19 | 38.78 |
| Os07t0442900-01 | Rice | plasma membrane | 39.7 | 38.16 |
| EER98393 | Sorghum | endoplasmic reticulum, plasma membrane, plastid, vacuole | 38.19 | 37.81 |
| HORVU1Hr1G062380.3 | Barley | plastid | 40.7 | 37.33 |
| AT4G03540.1 | Thale cress | extracellular, plasma membrane, vacuole | 24.12 | 29.27 |
| AT5G44550.1 | Thale cress | plasma membrane | 28.14 | 28.43 |
| AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 26.13 | 26.4 |
| AT4G15630.1 | Thale cress | plasma membrane | 24.62 | 25.79 |
| AT1G03700.1 | Thale cress | plasma membrane | 21.11 | 25.61 |
| AT4G15620.1 | Thale cress | plasma membrane | 23.12 | 24.21 |
| AT4G25040.1 | Thale cress | extracellular, plasma membrane, vacuole | 19.1 | 22.35 |
Protein Annotations
| MapMan:35.1 | EntrezGene:819813 | ProteinID:AAF08575.1 | ProteinID:AEE74385.1 | ArrayExpress:AT3G06390 | EnsemblPlantsGene:AT3G06390 |
| RefSeq:AT3G06390 | TAIR:AT3G06390 | RefSeq:AT3G06390-TAIR-G | EnsemblPlants:AT3G06390.1 | TAIR:AT3G06390.1 | EMBL:BT003953 |
| EMBL:BT005725 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | RefSeq:NP_187290.1 |
| PFAM:PF04535 | PO:PO:0009005 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF150 | UniProt:Q9SQU2 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI000000C1FF | SEG:seg | : | : | : |
Description
CASP-like protein 1D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU2]
Coordinates
chr3:-:1938335..1939853
Molecular Weight (calculated)
21157.8 Da
IEP (calculated)
4.469
GRAVY (calculated)
0.627
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTENPDPE TGKSEPIPAS ATPPPSSAAS FLDCRKIDII TRVLLFSATL TALIVMVTSD QTEMTQLPGV SSPAPVSAEF NDSPAFIYFV VALVVASFYA
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.