Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 5
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033751.1-P | Field mustard | plasma membrane | 87.31 | 89.58 |
| CDY49491 | Canola | plasma membrane | 89.34 | 88.44 |
| CDY49020 | Canola | plasma membrane | 89.34 | 88.44 |
| CDY63706 | Canola | endoplasmic reticulum, plasma membrane, plastid | 88.32 | 87.88 |
| Bra039516.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 87.82 | 87.37 |
| CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 87.82 | 87.37 |
| AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 70.05 | 70.05 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 51.27 | 53.44 |
| Solyc02g069730.2.1 | Tomato | plasma membrane | 50.25 | 50.77 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 49.75 | 49.25 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 50.76 | 49.02 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 49.75 | 48.76 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 44.16 | 44.85 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 42.13 | 40.89 |
| Os12t0610800-01 | Rice | plasma membrane | 39.59 | 40.0 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 45.69 | 38.63 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 37.06 | 37.24 |
| EES17365 | Sorghum | plastid | 39.09 | 36.49 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 36.04 | 36.22 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 36.04 | 36.22 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 36.55 | 35.12 |
| AT4G03540.1 | Thale cress | extracellular, plasma membrane, vacuole | 28.93 | 34.76 |
| AT1G03700.1 | Thale cress | plasma membrane | 26.9 | 32.32 |
| AT3G06390.1 | Thale cress | plasma membrane | 28.43 | 28.14 |
| AT4G15610.1 | Thale cress | plasma membrane | 24.87 | 25.39 |
| AT4G15630.1 | Thale cress | plasma membrane | 24.37 | 25.26 |
| AT4G15620.1 | Thale cress | plasma membrane | 24.37 | 25.26 |
| AT4G25040.1 | Thale cress | extracellular, plasma membrane, vacuole | 20.81 | 24.12 |
Protein Annotations
| MapMan:35.1 | EntrezGene:834482 | ProteinID:AED95122.1 | ArrayExpress:AT5G44550 | EnsemblPlantsGene:AT5G44550 | RefSeq:AT5G44550 |
| TAIR:AT5G44550 | RefSeq:AT5G44550-TAIR-G | EnsemblPlants:AT5G44550.1 | TAIR:AT5G44550.1 | EMBL:AY065079 | EMBL:AY085818 |
| EMBL:AY114543 | ProteinID:BAB09162.1 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0051536 | RefSeq:NP_199268.1 | PFAM:PF04535 | PO:PO:0000293 | PO:PO:0009005 | PO:PO:0020100 |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 | UniProt:Q9FI10 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI00000A3FD2 |
| SEG:seg | : | : | : | : | : |
Description
CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
Coordinates
chr5:-:17941842..17943283
Molecular Weight (calculated)
20748.9 Da
IEP (calculated)
10.224
GRAVY (calculated)
0.711
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.