Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plasma membrane, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- peroxisome 2
- extracellular 2
- cytosol 1
- unclear 1
- golgi 2
- plasma membrane 3
- vacuole 3
- endoplasmic reticulum 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G44550.1 | KRH22653 | AT5G22290.1 | 21798944 |
AT5G44550.1 | KRH26664 | AT5G22290.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 94.85 | 78.97 |
KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 69.59 | 71.43 |
KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 71.13 | 68.66 |
VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 53.61 | 50.98 |
Solyc02g069730.2.1 | Tomato | plasma membrane | 51.03 | 50.77 |
PGSC0003DMT400054615 | Potato | plasma membrane | 50.0 | 48.74 |
AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 47.94 | 47.21 |
Bra033751.1-P | Field mustard | plasma membrane | 45.88 | 46.35 |
GSMUA_Achr7P08030_001 | Banana | plasma membrane | 48.45 | 46.31 |
CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 46.91 | 45.73 |
CDY63706 | Canola | endoplasmic reticulum, plasma membrane, plastid | 46.39 | 45.45 |
CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 46.39 | 45.45 |
Bra039516.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 46.39 | 45.45 |
CDY49491 | Canola | plasma membrane | 45.88 | 44.72 |
CDY49020 | Canola | plasma membrane | 45.88 | 44.72 |
CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 45.88 | 44.72 |
AT5G44550.1 | Thale cress | plasma membrane | 44.85 | 44.16 |
Os12t0610800-01 | Rice | plasma membrane | 41.75 | 41.54 |
TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 40.72 | 40.31 |
TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 40.72 | 40.31 |
TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 40.21 | 39.8 |
Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 41.75 | 39.51 |
EES17365 | Sorghum | plastid | 42.27 | 38.86 |
KRH25574 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 25.77 | 30.67 |
KRH50041 | Soybean | plasma membrane | 25.26 | 30.62 |
KRH50920 | Soybean | cytosol, plasma membrane, vacuole | 29.38 | 30.32 |
KRH55963 | Soybean | extracellular | 25.26 | 30.06 |
KRH02204 | Soybean | cytosol, plasma membrane, vacuole | 28.87 | 29.95 |
KRG96380 | Soybean | plasma membrane | 26.8 | 26.53 |
KRH11251 | Soybean | plasma membrane | 27.32 | 26.24 |
KRH68112 | Soybean | plasma membrane | 25.77 | 25.91 |
KRH72716 | Soybean | extracellular | 18.56 | 25.53 |
KRH06871 | Soybean | endoplasmic reticulum, plasma membrane | 21.13 | 25.47 |
KRH17069 | Soybean | extracellular, plasma membrane, vacuole | 21.13 | 24.55 |
KRH02202 | Soybean | golgi, plasma membrane, vacuole | 23.2 | 23.32 |
KRG94650 | Soybean | plasma membrane | 22.68 | 22.34 |
KRH50921 | Soybean | plasma membrane | 21.13 | 21.24 |
KRH21024 | Soybean | cytosol, plasma membrane, vacuole | 20.62 | 21.16 |
Protein Annotations
EntrezGene:100793643 | MapMan:35.1 | EMBL:ACUP02004845 | InterPro:CASP/CASPL | InterPro:CASP_dom | EnsemblPlantsGene:GLYMA_08G129300 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0051536 | UniProt:I1KST6 | EnsemblPlants:KRH43078 | ProteinID:KRH43078 | ProteinID:KRH43078.1 |
PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000233926D |
Description
hypothetical protein
Coordinates
chr8:-:9956018..9957287
Molecular Weight (calculated)
21056.2 Da
IEP (calculated)
9.127
GRAVY (calculated)
0.560
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MASENGDKLE LAFSVVPDPK PKKDWVNLSL RVVAFLATAS ATLVMAFNKQ TKSMVVATIG TNPVTITLTA MFQHTPAFTF FVIVNAIASF YNMVVIGVEI
101: LGPQYDYKEL RLGLIAILDV MTMALAATGD GAATFMAELG RNGNSHARWD KICDKFEAYC NRGGVALIAS FVGLILLLVV TVMSITKMLK LNRI
101: LGPQYDYKEL RLGLIAILDV MTMALAATGD GAATFMAELG RNGNSHARWD KICDKFEAYC NRGGVALIAS FVGLILLLVV TVMSITKMLK LNRI
001: MAREKIVVAG GTTKSWKLLL GLRIFAFMAT LAAAIVMSLN KETKTLVVAT IGTVPIKATL TAKFQHTPAF VFFVIANVMV SFHNLLMIVV QIFSRKLEYK
101: GLRLLSIAIL DMLNATLVSA AANAAVFVAE LGKNGNKHAK WNKVCDRFTT YCDHGAGAII AAFAGVILML LVSAVSISRL LINSKNFSTT ATTTSVV
101: GLRLLSIAIL DMLNATLVSA AANAAVFVAE LGKNGNKHAK WNKVCDRFTT YCDHGAGAII AAFAGVILML LVSAVSISRL LINSKNFSTT ATTTSVV
Arabidopsis Description
CASP-like protein 1B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP0]
SUBAcon: [extracellular,vacuole,plasma membrane,mitochondrion]
SUBAcon: [extracellular,vacuole,plasma membrane,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.