Factsheet for Bra033751.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44550.1	Bra002403.1-P	AT5G22290.1	21798944
AT5G44550.1	Bra006619.1-P	AT5G22290.1	21798944
AT5G44550.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49020	Canola	plasma membrane	100.0	96.48
AT5G44550.1	Thale cress	plasma membrane	89.58	87.31
Bra039516.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	88.02	85.35
KRH37705	Soybean	extracellular, plasma membrane, plastid, vacuole	52.6	53.44
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	52.6	49.51
Solyc02g069730.2.1	Tomato	plasma membrane	50.0	49.23
KRH12746	Soybean	cytosol, plasma membrane, vacuole	50.52	48.26
PGSC0003DMT400054615	Potato	plasma membrane	50.0	48.24
KRH43078	Soybean	peroxisome, plasma membrane, plastid, vacuole	46.35	45.88
GSMUA_Achr7P08030_001	Banana	plasma membrane	43.23	40.89
Os12t0610800-01	Rice	plasma membrane	40.1	39.49
KRH59207	Soybean	extracellular, plasma membrane, vacuole	47.4	39.06
TraesCS5B01G054100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	38.54	37.76
TraesCS5D01G059600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	38.54	37.76
TraesCS5A01G049000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	38.02	37.24
EES17365	Sorghum	plastid	40.62	36.97
Zm00001d031047_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	38.54	36.1
Bra034215.1-P	Field mustard	extracellular, plasma membrane	30.73	35.98
Bra015256.1-P	Field mustard	extracellular, plasma membrane, vacuole	28.65	31.43
Bra012777.1-P	Field mustard	plasma membrane	29.17	29.02
Bra012775.1-P	Field mustard	plasma membrane	26.56	26.84
Bra020752.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	28.12	26.34
Bra013858.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	22.92	26.04
Bra038078.1-P	Field mustard	plasma membrane	26.04	25.91
Bra010476.1-P	Field mustard	extracellular, plasma membrane	21.88	25.0
Bra019194.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.88	24.71

Protein Annotations

EnsemblPlants:Bra033751.1	EnsemblPlants:Bra033751.1-P	EnsemblPlantsGene:Bra033751	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF120
PFAM:PF04535	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000253F63C	UniProt:M4EY60	MapMan:35.1

Description

AT5G44550 (E=2e-092) | integral membrane family protein

Coordinates

chrA06:+:25267524..25268808

Molecular Weight (calculated)

20208.2 Da

IEP (calculated)

10.575

GRAVY (calculated)

0.727

Length

192 amino acids

Sequence
(BLAST)

001: MAVAKLVLAA TSGKSSKILL GLRVLAFLAT LSAAIVMGLN KETKTFVVGN VGNTPIKATF TAKFQHTPAF VYFVVANAMV SFHNLLMIAL QLFGGKTELT
101: GFRLLSIAIL DMLNVTLLSA AANAAGFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVVLML IISAVSISRL VQPNKCSIST TA

Best Arabidopsis Sequence Match ( AT5G44550.1 )
(BLAST)

001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP

Arabidopsis Description

CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.