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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • extracellular 2
  • plasma membrane 3
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, vacuole
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11050 Canola cytosol 81.18 100.0
CDX92668 Canola extracellular, plasma membrane, vacuole 99.41 99.41
Bra013858.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 84.71 85.21
AT4G25040.1 Thale cress extracellular, plasma membrane, vacuole 81.76 81.76
Bra010476.1-P Field mustard extracellular, plasma membrane 80.0 80.95
Bra034215.1-P Field mustard extracellular, plasma membrane 28.82 29.88
KRH06871 Soybean endoplasmic reticulum, plasma membrane 27.06 28.57
KRG94650 Soybean plasma membrane 29.41 25.38
Bra015256.1-P Field mustard extracellular, plasma membrane, vacuole 25.29 24.57
Bra033751.1-P Field mustard plasma membrane 24.71 21.88
VIT_14s0068g01400.t01 Wine grape endoplasmic reticulum, plasma membrane, plastid, vacuole 28.82 21.3
Bra038078.1-P Field mustard plasma membrane 24.12 21.24
Bra039516.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 24.12 20.71
Bra012775.1-P Field mustard plasma membrane 22.35 20.0
Bra012777.1-P Field mustard plasma membrane 21.76 19.17
Bra020752.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 22.94 19.02
Protein Annotations
EnsemblPlants:Bra019194.1EnsemblPlants:Bra019194.1-PEnsemblPlantsGene:Bra019194GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF157
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI0002541052UniProt:M4DRQ1
MapMan:35.1:::::
Description
AT4G25040 (E=6e-061) | integral membrane family protein
Coordinates
chrA03:+:25768778..25769930
Molecular Weight (calculated)
18635.9 Da
IEP (calculated)
8.786
GRAVY (calculated)
0.702
Length
170 amino acids
Sequence
(BLAST)
001: MMGANDERRT PLMNLGVQVS MRVLAIGTAL ASMGLTITNH EVASVYGINF EAKYDYSSAF RYLVYAEIAI AGMTLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAMSDGYIGK YGNTHAGWLP ICGYVHNYCN RVTLSLALAF ASFLLLFILT VLTASAARHF
Best Arabidopsis Sequence Match ( AT4G25040.1 )
(BLAST)
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.