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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • extracellular 2
  • plasma membrane 3
  • endoplasmic reticulum 2
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34336 Canola endoplasmic reticulum, extracellular, plasma membrane 100.0 100.0
Bra019194.1-P Field mustard extracellular, plasma membrane, vacuole 85.21 84.71
Bra010476.1-P Field mustard extracellular, plasma membrane 84.02 84.52
AT4G25040.1 Thale cress extracellular, plasma membrane, vacuole 82.25 81.76
Bra034215.1-P Field mustard extracellular, plasma membrane 29.59 30.49
KRH06871 Soybean endoplasmic reticulum, plasma membrane 27.81 29.19
Bra015256.1-P Field mustard extracellular, plasma membrane, vacuole 27.22 26.29
KRG94650 Soybean plasma membrane 30.18 25.89
Bra033751.1-P Field mustard plasma membrane 26.04 22.92
VIT_14s0068g01400.t01 Wine grape endoplasmic reticulum, plasma membrane, plastid, vacuole 30.77 22.61
Bra039516.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 25.44 21.72
Bra020752.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 24.85 20.49
Bra012777.1-P Field mustard plasma membrane 23.08 20.21
Bra038078.1-P Field mustard plasma membrane 21.89 19.17
Bra012775.1-P Field mustard plasma membrane 20.12 17.89
Protein Annotations
EnsemblPlants:Bra013858.1EnsemblPlants:Bra013858.1-PEnsemblPlantsGene:Bra013858GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF157
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI000254682EUniProt:M4DBJ8
MapMan:35.1:::::
Description
AT4G25040 (E=9e-060) | integral membrane family protein
Coordinates
chrA01:+:8107650..8108683
Molecular Weight (calculated)
18186.2 Da
IEP (calculated)
8.800
GRAVY (calculated)
0.687
Length
169 amino acids
Sequence
(BLAST)
001: MGDNGGKRTP SMNLAVQVSM RVLVIGTALA SMGLMITNHE VASVYGIAFE AKYSDSSAFR YLVYADIAIS ALTLFTLVWA CLAVRNRGLV FALFFFDLLA
101: TLTAMSAFSA ATSEGYIGKY GNTHAGWLPI CGYVHGYCNR GTLSLAFSFA SFLLLFILTV LTASAARHH
Best Arabidopsis Sequence Match ( AT4G25040.1 )
(BLAST)
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.