Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- cytosol 1
- peroxisome 1
- plastid 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44550.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069730.2.1 | Tomato | plasma membrane | 53.92 | 56.41 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 51.47 | 55.56 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 52.94 | 54.27 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 52.94 | 53.73 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 50.98 | 53.61 |
| Bra033751.1-P | Field mustard | plasma membrane | 49.51 | 52.6 |
| CDY49491 | Canola | plasma membrane | 50.98 | 52.26 |
| AT4G20390.1 | Thale cress | extracellular, mitochondrion, plasma membrane, vacuole | 49.51 | 51.27 |
| CDY49020 | Canola | plasma membrane | 50.0 | 51.26 |
| AT5G44550.1 | Thale cress | plasma membrane | 49.02 | 50.76 |
| CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 49.02 | 50.25 |
| CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 49.02 | 50.25 |
| CDY63706 | Canola | endoplasmic reticulum, plasma membrane, plastid | 48.04 | 49.49 |
| CDY14930 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.55 | 48.99 |
| Bra039516.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 47.55 | 48.99 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 45.1 | 45.32 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 50.98 | 44.64 |
| Os12t0610800-01 | Rice | plasma membrane | 39.71 | 41.54 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 39.22 | 40.82 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 39.22 | 40.82 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 39.22 | 40.82 |
| EES17365 | Sorghum | plastid | 40.2 | 38.86 |
| VIT_12s0028g03760.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 28.92 | 36.65 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 35.78 | 35.61 |
| VIT_05s0020g01820.t01 | Wine grape | cytosol, plasma membrane, vacuole | 27.94 | 29.23 |
| VIT_07s0104g01350.t01 | Wine grape | cytosol | 26.96 | 27.23 |
| VIT_05s0020g01830.t01 | Wine grape | cytosol | 25.0 | 24.52 |
| VIT_17s0000g00560.t01 | Wine grape | endoplasmic reticulum | 21.57 | 21.36 |
| VIT_14s0068g01400.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid, vacuole | 15.69 | 13.91 |
Protein Annotations
| EntrezGene:100247713 | wikigene:100247713 | MapMan:35.1 | EMBL:AM460343 | ProteinID:CAN76914 | ProteinID:CAN76914.1 |
| InterPro:CASP/CASPL | InterPro:CASP_dom | ProteinID:CBI39011 | ProteinID:CBI39011.3 | EMBL:EC925758 | EMBL:FN596741 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0051536 | EntrezGene:LOC100247713 | wikigene:LOC100247713 | PFAM:PF04535 | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF120 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI00015CBDB8 | ArrayExpress:VIT_10s0092g00220 | EnsemblPlantsGene:VIT_10s0092g00220 |
| EnsemblPlants:VIT_10s0092g00220.t01 | unigene:Vvi.22079 | RefSeq:XP_002276662 | RefSeq:XP_002276662.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr10:-:11545935..11548737
Molecular Weight (calculated)
21579.9 Da
IEP (calculated)
10.275
GRAVY (calculated)
0.601
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKGEEKPE LVGSKQGIVS VTKAKHDQIV LVLRVVAFLA TASATIVMGL NQETKTLLVG TIGTTPIRAT LKAKFQHTPA FVFFVVANGL ASVYNLVMLG
101: VDVFGRKLDC KGLRLVIISI LDMVIVAVVA AGASSAAFMA ELGKNGNSHA KWNKICDKFE SFCHQGGGAL IPSFIALLLL LLISAISIIT LHNQKLTSPH
201: ATTP
101: VDVFGRKLDC KGLRLVIISI LDMVIVAVVA AGASSAAFMA ELGKNGNSHA KWNKICDKFE SFCHQGGGAL IPSFIALLLL LLISAISIIT LHNQKLTSPH
201: ATTP
001: MAREKIVVAG GTTKSWKLLL GLRIFAFMAT LAAAIVMSLN KETKTLVVAT IGTVPIKATL TAKFQHTPAF VFFVIANVMV SFHNLLMIVV QIFSRKLEYK
101: GLRLLSIAIL DMLNATLVSA AANAAVFVAE LGKNGNKHAK WNKVCDRFTT YCDHGAGAII AAFAGVILML LVSAVSISRL LINSKNFSTT ATTTSVV
101: GLRLLSIAIL DMLNATLVSA AANAAVFVAE LGKNGNKHAK WNKVCDRFTT YCDHGAGAII AAFAGVILML LVSAVSISRL LINSKNFSTT ATTTSVV
Arabidopsis Description
CASP-like protein 1B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP0]
SUBAcon: [mitochondrion,plasma membrane,extracellular,vacuole]
SUBAcon: [mitochondrion,plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.