Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76458 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 83.25 | 82.41 |
| CDY31439 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 80.2 | 79.4 |
| AT5G44550.1 | Thale cress | plasma membrane | 70.05 | 70.05 |
| Solyc02g069730.2.1 | Tomato | plasma membrane | 51.78 | 52.31 |
| KRH37705 | Soybean | extracellular, plasma membrane, plastid, vacuole | 48.73 | 50.79 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 50.25 | 49.75 |
| VIT_10s0092g00220.t01 | Wine grape | cytosol, plasma membrane, vacuole | 51.27 | 49.51 |
| KRH12746 | Soybean | cytosol, plasma membrane, vacuole | 49.24 | 48.26 |
| KRH43078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 47.21 | 47.94 |
| KRH59207 | Soybean | extracellular, plasma membrane, vacuole | 48.73 | 41.2 |
| Os12t0610800-01 | Rice | plasma membrane | 38.58 | 38.97 |
| GSMUA_Achr7P08030_001 | Banana | plasma membrane | 40.1 | 38.92 |
| Zm00001d031047_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 37.56 | 36.1 |
| EES17365 | Sorghum | plastid | 38.58 | 36.02 |
| AT4G03540.1 | Thale cress | extracellular, plasma membrane, vacuole | 28.93 | 34.76 |
| TraesCS5B01G054100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 34.52 | 34.69 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 34.01 | 34.18 |
| TraesCS5D01G059600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 34.01 | 34.18 |
| AT1G03700.1 | Thale cress | plasma membrane | 27.41 | 32.93 |
| AT4G15610.1 | Thale cress | plasma membrane | 26.4 | 26.94 |
| AT3G06390.1 | Thale cress | plasma membrane | 26.4 | 26.13 |
| AT4G15630.1 | Thale cress | plasma membrane | 23.35 | 24.21 |
| AT4G25040.1 | Thale cress | extracellular, plasma membrane, vacuole | 19.8 | 22.94 |
| AT4G15620.1 | Thale cress | plasma membrane | 21.32 | 22.11 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827787 | ProteinID:AEE84323.1 | ArrayExpress:AT4G20390 | EnsemblPlantsGene:AT4G20390 | RefSeq:AT4G20390 |
| TAIR:AT4G20390 | RefSeq:AT4G20390-TAIR-G | EnsemblPlants:AT4G20390.1 | TAIR:AT4G20390.1 | EMBL:AY086390 | EMBL:BT025759 |
| ProteinID:CAB45805.1 | ProteinID:CAB79039.1 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 |
| RefSeq:NP_193772.1 | PFAM:PF04535 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025281 |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF120 | UniProt:Q9SUP0 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI00000A01D6 |
| SEG:seg | : | : | : | : | : |
Description
CASP-like protein 1B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP0]
Coordinates
chr4:+:11006815..11008076
Molecular Weight (calculated)
21149.6 Da
IEP (calculated)
10.938
GRAVY (calculated)
0.765
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIVVAG GTTKSWKLLL GLRIFAFMAT LAAAIVMSLN KETKTLVVAT IGTVPIKATL TAKFQHTPAF VFFVIANVMV SFHNLLMIVV QIFSRKLEYK
101: GLRLLSIAIL DMLNATLVSA AANAAVFVAE LGKNGNKHAK WNKVCDRFTT YCDHGAGAII AAFAGVILML LVSAVSISRL LINSKNFSTT ATTTSVV
101: GLRLLSIAIL DMLNATLVSA AANAAVFVAE LGKNGNKHAK WNKVCDRFTT YCDHGAGAII AAFAGVILML LVSAVSISRL LINSKNFSTT ATTTSVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.