CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031047_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	75.83	78.05
TraesCS5D01G059600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	66.35	71.43
TraesCS5B01G054100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	66.35	71.43
TraesCS5A01G049000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	66.35	71.43
Os12t0610800-01	Rice	plasma membrane	64.45	69.74
GSMUA_Achr7P08030_001	Banana	plasma membrane	51.66	53.69
KRH37705	Soybean	extracellular, plasma membrane, plastid, vacuole	38.39	42.86
KRH43078	Soybean	peroxisome, plasma membrane, plastid, vacuole	38.86	42.27
Bra033751.1-P	Field mustard	plasma membrane	36.97	40.62
CDY49491	Canola	plasma membrane	37.91	40.2
VIT_10s0092g00220.t01	Wine grape	cytosol, plasma membrane, vacuole	38.86	40.2
Solyc02g069730.2.1	Tomato	plasma membrane	36.49	39.49
KRH12746	Soybean	cytosol, plasma membrane, vacuole	37.44	39.3
CDY49020	Canola	plasma membrane	36.97	39.2
CDX76458	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	36.97	39.2
PGSC0003DMT400054615	Potato	plasma membrane	36.97	39.2
AT5G44550.1	Thale cress	plasma membrane	36.49	39.09
CDY31439	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	36.49	38.69
AT4G20390.1	Thale cress	extracellular, mitochondrion, plasma membrane, vacuole	36.02	38.58
CDY14930	Canola	endoplasmic reticulum, plasma membrane, vacuole	35.07	37.37
Bra039516.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	35.07	37.37
CDY63706	Canola	endoplasmic reticulum, plasma membrane, plastid	35.07	37.37
KRH59207	Soybean	extracellular, plasma membrane, vacuole	38.86	35.19
EES19280	Sorghum	extracellular, plasma membrane, vacuole	24.17	31.48
EES02949	Sorghum	plastid	25.59	24.32
EER98393	Sorghum	endoplasmic reticulum, plasma membrane, plastid, vacuole	19.43	20.4

Protein Annotations

MapMan:35.1	EntrezGene:8070143	InterPro:CASP/CASPL	InterPro:CASP_dom	EnsemblPlants:EES17365	ProteinID:EES17365
ProteinID:EES17365.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	GO:GO:0051536	PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF120
EnsemblPlantsGene:SORBI_3008G164900	unigene:Sbi.7599	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0001A88325	RefSeq:XP_002443527.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:59829035..59831309

Molecular Weight (calculated)

22114.2 Da

IEP (calculated)

10.210

GRAVY (calculated)

0.515

Length

211 amino acids

Sequence
(BLAST)

001: MDLERGSKTP PSSAPAAAAA TTTTSTCCSN KRPQLRDRLV ALQPVVLRAA ATLATAVAAA VMALNAQSYT AVVAIVGTRP LTQTFTTKFR DTPAFVYFVI
101: ANAIAAVYNL VMLLFRCLIL RRRMAGLVVH MLDMVIMALL ATGAATAAAM AELGKNGNVH ARWNPICDRF GSFCSRGGVA LASSFTGVAL MLALNLLSAA
201: SNAQCSPGQY E

Best Arabidopsis Sequence Match ( AT5G44550.1 )
(BLAST)

001: MAVSKLTLAA TSGKSCKILL GLRLLAFSAT LSAAIVMGLN KETKTFIVGK VGNTPIQATF TAKFDHTPAF VFFVVANAMV SFHNLLMIAL QIFGGKMEFT
101: GFRLLSVAIL DMLNVTLISA AANAAAFMAE VGKNGNKHAR WDKICDRFAT YCDHGAGALI AAFAGVILML IISAASISRL VQPNKCCSTT ASPSVVP

Arabidopsis Description

CASP-like protein 1B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.