Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G248700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 65.7 | 71.96 |
| TraesCS1D01G248200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 65.22 | 71.43 |
| Zm00001d019457_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid, vacuole | 63.77 | 67.35 |
| TraesCS1B01G259400.1 | Wheat | plasma membrane | 59.9 | 65.61 |
| Zm00001d005158_P001 | Maize | extracellular | 63.28 | 64.53 |
| EER98393 | Sorghum | endoplasmic reticulum, plasma membrane, plastid, vacuole | 60.87 | 62.69 |
| HORVU1Hr1G062380.3 | Barley | plastid | 64.25 | 61.29 |
| GSMUA_Achr5P00430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 49.76 | 53.93 |
| GSMUA_Achr9P30950_001 | Banana | plasma membrane | 53.62 | 53.62 |
| KRH50921 | Soybean | plasma membrane | 42.03 | 45.08 |
| KRH02202 | Soybean | golgi, plasma membrane, vacuole | 41.55 | 44.56 |
| VIT_05s0020g01830.t01 | Wine grape | cytosol | 42.51 | 42.31 |
| Solyc01g067300.2.1 | Tomato | cytosol | 38.65 | 40.82 |
| KRH21024 | Soybean | cytosol, plasma membrane, vacuole | 37.2 | 40.74 |
| AT3G06390.1 | Thale cress | plasma membrane | 38.16 | 39.7 |
| AT4G15610.1 | Thale cress | plasma membrane | 36.23 | 38.86 |
| PGSC0003DMT400058342 | Potato | cytosol | 36.72 | 38.58 |
| CDY05260 | Canola | plasma membrane | 37.2 | 37.56 |
| CDX76993 | Canola | plasma membrane | 37.2 | 37.56 |
| CDY09750 | Canola | plasma membrane | 34.78 | 37.31 |
| CDX90580 | Canola | plasma membrane | 34.78 | 37.31 |
| Bra012777.1-P | Field mustard | plasma membrane | 34.78 | 37.31 |
| CDY24696 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 36.72 | 37.07 |
| Bra020752.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 36.72 | 37.07 |
| Os01t0237000-01 | Rice | golgi, plasma membrane, vacuole | 20.29 | 25.93 |
| Os05t0245300-01 | Rice | mitochondrion, plasma membrane | 19.81 | 25.31 |
| Os01t0363300-01 | Rice | golgi, plasma membrane, plastid | 24.64 | 23.72 |
| Os12t0610800-01 | Rice | plasma membrane | 20.29 | 21.54 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4343098 | EMBL:AK073296 | ProteinID:BAC84694.1 | ProteinID:BAF21440.1 | ProteinID:BAT01276.1 |
| InterPro:CASP/CASPL | InterPro:CASP_dom | ProteinID:EAZ39636.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | EnsemblPlantsGene:Os07g0442900 |
| EnsemblPlants:Os07t0442900-01 | PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF150 | UniProt:Q6YT98 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI00001BF7A1 | RefSeq:XP_015644614.1 | SEG:seg | : | : |
Description
Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os07t0442900-01)
Coordinates
chr7:+:14988874..14990789
Molecular Weight (calculated)
21643.8 Da
IEP (calculated)
10.256
GRAVY (calculated)
0.752
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVDGTTAP SSGGKTATVA LESGGGRYGG PAPAKCSGAN LALRALLFAV SLSALVVLVT AKQTVMVPFV IRPPQFILAP VPAKYTHSPA LIYLLAALCA
101: TCFYSLITAI SSVRLLSSSA CSAKTLFYLI LLDVFYAAVM ASATGTAGAV AWVGLKGNSH TRWNKICNVY GKFCRHIGSS TFLALIAAIV LVLLAFLNAY
201: SLYRRSR
101: TCFYSLITAI SSVRLLSSSA CSAKTLFYLI LLDVFYAAVM ASATGTAGAV AWVGLKGNSH TRWNKICNVY GKFCRHIGSS TFLALIAAIV LVLLAFLNAY
201: SLYRRSR
001: MGYETKSTLD TERSTAPGTG TTTKSCSMTQ VVLRFVLFAA TLTSIVVMVT SKQTKNIFLP GTPIRIPAAE FTNSPALIYF VVALSVACFY SIVSTFVTVS
101: AFKKHSCSAV LLLNLAIMDA VMVGIVASAT GAGGGVAYLG LKGNKEVRWG KICHIYDKFC RHVGGAIAVS LFASVVLLLL SIISVLSLYK KIR
101: AFKKHSCSAV LLLNLAIMDA VMVGIVASAT GAGGGVAYLG LKGNKEVRWG KICHIYDKFC RHVGGAIAVS LFASVVLLLL SIISVLSLYK KIR
Arabidopsis Description
CASP-like protein 1D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE29]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.