Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067300.2.1 | Tomato | cytosol | 91.88 | 92.35 |
| KRH50921 | Soybean | plasma membrane | 48.73 | 49.74 |
| VIT_05s0020g01830.t01 | Wine grape | cytosol | 51.27 | 48.56 |
| KRH02202 | Soybean | golgi, plasma membrane, vacuole | 46.7 | 47.67 |
| CDY09750 | Canola | plasma membrane | 46.7 | 47.67 |
| Bra012777.1-P | Field mustard | plasma membrane | 46.19 | 47.15 |
| CDX90580 | Canola | plasma membrane | 46.19 | 47.15 |
| AT4G15610.1 | Thale cress | plasma membrane | 45.18 | 46.11 |
| KRH21024 | Soybean | cytosol, plasma membrane, vacuole | 44.16 | 46.03 |
| GSMUA_Achr9P30950_001 | Banana | plasma membrane | 47.21 | 44.93 |
| AT3G06390.1 | Thale cress | plasma membrane | 44.67 | 44.22 |
| TraesCS1A01G248700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 41.62 | 43.39 |
| TraesCS1D01G248200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 41.12 | 42.86 |
| GSMUA_Achr5P00430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 40.61 | 41.88 |
| CDY05260 | Canola | plasma membrane | 42.64 | 40.98 |
| CDX76993 | Canola | plasma membrane | 42.64 | 40.98 |
| CDY24696 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 42.13 | 40.49 |
| Bra020752.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 42.13 | 40.49 |
| EER98393 | Sorghum | endoplasmic reticulum, plasma membrane, plastid, vacuole | 40.61 | 39.8 |
| TraesCS1B01G259400.1 | Wheat | plasma membrane | 38.07 | 39.68 |
| Zm00001d019457_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid, vacuole | 39.09 | 39.29 |
| Zm00001d005158_P001 | Maize | extracellular | 39.09 | 37.93 |
| HORVU1Hr1G062380.3 | Barley | plastid | 40.61 | 36.87 |
| Os07t0442900-01 | Rice | plasma membrane | 38.58 | 36.72 |
| PGSC0003DMT400058378 | Potato | plasma membrane | 28.93 | 29.38 |
| PGSC0003DMT400076357 | Potato | extracellular | 21.83 | 26.54 |
| PGSC0003DMT400031372 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 22.84 | 24.86 |
| PGSC0003DMT400069269 | Potato | plasma membrane | 20.81 | 23.03 |
| PGSC0003DMT400029522 | Potato | plasma membrane | 22.34 | 21.89 |
| PGSC0003DMT400069270 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 20.3 | 21.51 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 17.26 | 17.09 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058342 | EnsemblPlantsGene:PGSC0003DMG400022659 | EntrezGene:102602009 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF150 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400022659 | RefSeq:XP_006342778.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002962014 | UniProt:M1C2I3 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein In26 [Source:PGSC_GENE;Acc:PGSC0003DMG400022659]
Coordinates
chr1:-:58572019..58575739
Molecular Weight (calculated)
20905.1 Da
IEP (calculated)
9.126
GRAVY (calculated)
0.746
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEPEKVVP PVEAPVAEPE KAAPPPSTTR PTDYFAVADV VLRLLVFASA LVSVVVMSTS KETEMLPNPR PAKFTQSPAL IYFVVALSVA GFFSLITTLG
101: SLYSLIKPGC CAKIISHFIV IDVLLLGIVA SATGAAGSVT YIGLKGNTYV GWREICTLYG KFCRYLGASI GVSLFASVML VLLVLLSVYS LSKKIPK
101: SLYSLIKPGC CAKIISHFIV IDVLLLGIVA SATGAAGSVT YIGLKGNTYV GWREICTLYG KFCRYLGASI GVSLFASVML VLLVLLSVYS LSKKIPK
001: MASTENPDPE TGKSEPIPAS ATPPPSSAAS FLDCRKIDII TRVLLFSATL TALIVMVTSD QTEMTQLPGV SSPAPVSAEF NDSPAFIYFV VALVVASFYA
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT
Arabidopsis Description
CASP-like protein 1D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.