Factsheet for PGSC0003DMT400076357

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078250.2.1	Tomato	extracellular	96.91	96.91
KRH50041	Soybean	plasma membrane	55.56	56.25
GSMUA_Achr6P13870_001	Banana	extracellular, plasma membrane	44.44	45.0
EES19280	Sorghum	extracellular, plasma membrane, vacuole	43.83	43.83
Os01t0237000-01	Rice	golgi, plasma membrane, vacuole	41.98	41.98
TraesCS7D01G130400.1	Wheat	plasma membrane	41.36	41.36
Zm00001d010038_P001	Maize	plasma membrane	41.36	41.1
TraesCS3D01G167400.1	Wheat	plasma membrane	39.51	41.03
TraesCS3B01G190800.1	Wheat	mitochondrion	38.89	40.38
HORVU7Hr1G027410.1	Barley	extracellular, plasma membrane	40.12	40.12
TraesCS3A01G160200.1	Wheat	plasma membrane	38.27	39.74
TraesCS7B01G031400.1	Wheat	plasma membrane	39.51	39.51
TraesCS7A01G131000.1	Wheat	plasma membrane	39.51	39.51
HORVU3Hr1G032350.1	Barley	plasma membrane	37.65	39.1
Os05t0245300-01	Rice	mitochondrion, plasma membrane	37.04	37.04
GSMUA_Achr3P03240_001	Banana	plasma membrane	44.44	36.73
PGSC0003DMT400031372	Potato	endoplasmic reticulum, plasma membrane, vacuole	30.86	27.62
PGSC0003DMT400058378	Potato	plasma membrane	32.72	27.32
PGSC0003DMT400069270	Potato	endoplasmic reticulum, plasma membrane, vacuole	29.01	25.27
PGSC0003DMT400069269	Potato	plasma membrane	27.16	24.72
PGSC0003DMT400054615	Potato	plasma membrane	28.4	23.12
PGSC0003DMT400058342	Potato	cytosol	26.54	21.83
PGSC0003DMT400029522	Potato	plasma membrane	25.31	20.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400076357	EnsemblPlantsGene:PGSC0003DMG400029690	EntrezGene:102592563	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF218
PFAM:PF04535	PGSC:PGSC0003DMG400029690	RefSeq:XP_006347042.1	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI0002949883	UniProt:M1CWK9	MapMan:35.1	:	:	:

Description

UPF0497 membrane protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029690]

Coordinates

chr2:-:34006236..34007814

Molecular Weight (calculated)

17624.3 Da

IEP (calculated)

10.052

GRAVY (calculated)

0.966

Length

162 amino acids

Sequence
(BLAST)

001: MTLANRITIF LLRFLALGAS VTAIIIMVTS HDSAQVLGMT FEAKFANTPT FKYFVGVNIL ASAYSLIVLF FPTKKMLGRI LLITDILMTL LLDSSISACL
101: AIAQVGKKGN THAGWLPICG QVPKFCDRVT GSLIAGFAAA ILYFLLLLFS FHNVLNLYTL KA

Best Arabidopsis Sequence Match ( AT4G03540.1 )
(BLAST)

001: MVKLTKRIGG LVLRLAAFGA ALAALIVMIT SRERASFLAI SLEAKYTDMA AFKYFVIANA VVSVYSFLVL FLPKESLLWK FVVVLDLVMT MLLTSSLSAA
101: LAVAQVGKKG NANAGWLPIC GQVPKFCDQI TGALIAGFVA LVLYVLLLLY SLHAVVDPFL LQKS

Arabidopsis Description

CASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V2N5]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.