Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- vacuole 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g072530.2.1 | Tomato | extracellular, plasma membrane, plastid | 93.01 | 93.01 |
| PGSC0003DMT400069269 | Potato | plasma membrane | 74.73 | 78.09 |
| PGSC0003DMT400031372 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 55.38 | 56.91 |
| VIT_17s0000g00560.t01 | Wine grape | endoplasmic reticulum | 51.08 | 46.12 |
| PGSC0003DMT400058378 | Potato | plasma membrane | 30.65 | 29.38 |
| PGSC0003DMT400076357 | Potato | extracellular | 25.27 | 29.01 |
| PGSC0003DMT400054615 | Potato | plasma membrane | 24.73 | 23.12 |
| PGSC0003DMT400058342 | Potato | cytosol | 21.51 | 20.3 |
| PGSC0003DMT400029522 | Potato | plasma membrane | 18.82 | 17.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069270 | EnsemblPlantsGene:PGSC0003DMG400026945 | EntrezGene:102589541 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF157 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400026945 | RefSeq:XP_006347352.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002964BF7 | UniProt:M1CK75 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein 8 [Source:PGSC_GENE;Acc:PGSC0003DMG400026945]
Coordinates
chr6:-:53306476..53308072
Molecular Weight (calculated)
20526.5 Da
IEP (calculated)
9.209
GRAVY (calculated)
0.448
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MENFGAKNRQ NQNTQNPPMK SDKCLLSTQI LLRILAIAFT LAATSMILTS KQAVTVFGIE MDARYSYSSA FKFFAIANMI GCAFSVLSLI LASVLGHKTP
101: DPKNYFYMFI HDLITMALLL AGCAAATAVG YVGKYGESHS GWMPICDHVD KFCRKVSHSI MLSYVAMILY LCLTIISANQ SRKIIV
101: DPKNYFYMFI HDLITMALLL AGCAAATAVG YVGKYGESHS GWMPICDHVD KFCRKVSHSI MLSYVAMILY LCLTIISANQ SRKIIV
001: MMGDNEGRRT PLLNLGVQVS MRVLTIGAAM ASMWVMITNR EVASVYGIAF EAKYSYSSAF RYLVYAQIAV CAATLFTLVW ACLAVRRRGL VFALFFFDLL
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
101: TTLTAISAFS AAFAEGYVGK YGNKQAGWLP ICGYVHGYCS RVTISLAMSF ASFILLFILT VLTASAARHY
Arabidopsis Description
CASP-like protein 1F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0L3]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.