Factsheet for GSMUA_Achr3P03240_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13870_001	Banana	extracellular, plasma membrane	65.31	80.0
TraesCS3B01G190800.1	Wheat	mitochondrion	42.35	53.21
TraesCS3D01G167400.1	Wheat	plasma membrane	41.84	52.56
TraesCS3A01G160200.1	Wheat	plasma membrane	41.84	52.56
HORVU3Hr1G032350.1	Barley	plasma membrane	41.84	52.56
Zm00001d010038_P001	Maize	plasma membrane	41.84	50.31
EES19280	Sorghum	extracellular, plasma membrane, vacuole	41.33	50.0
KRH50041	Soybean	plasma membrane	40.82	50.0
VIT_12s0028g03760.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	40.31	49.07
TraesCS7D01G130400.1	Wheat	plasma membrane	40.31	48.77
TraesCS7A01G131000.1	Wheat	plasma membrane	40.31	48.77
CDY70062	Canola	extracellular	29.59	48.33
TraesCS7B01G031400.1	Wheat	plasma membrane	39.8	48.15
HORVU7Hr1G027410.1	Barley	extracellular, plasma membrane	39.8	48.15
AT1G03700.1	Thale cress	plasma membrane	39.29	46.95
CDY18177	Canola	extracellular, plasma membrane, vacuole	39.29	46.95
CDX89875	Canola	extracellular, plasma membrane, vacuole	39.29	46.95
Os05t0245300-01	Rice	mitochondrion, plasma membrane	38.78	46.91
CDY48566	Canola	extracellular, plasma membrane	38.27	45.73
Bra034215.1-P	Field mustard	extracellular, plasma membrane	38.27	45.73
CDY21972	Canola	extracellular, plasma membrane	38.27	45.73
Solyc02g078250.2.1	Tomato	extracellular	37.76	45.68
PGSC0003DMT400076357	Potato	extracellular	36.73	44.44
Bra015256.1-P	Field mustard	extracellular, plasma membrane, vacuole	39.29	44.0
AT4G03540.1	Thale cress	extracellular, plasma membrane, vacuole	36.73	43.9
Os01t0237000-01	Rice	golgi, plasma membrane, vacuole	36.22	43.83
KRH25574	Soybean	endoplasmic reticulum, plasma membrane, vacuole	36.22	43.56
KRH55963	Soybean	extracellular	35.71	42.94
KRH17069	Soybean	extracellular, plasma membrane, vacuole	31.63	37.13
KRH72716	Soybean	extracellular	26.02	36.17
GSMUA_Achr7P08030_001	Banana	plasma membrane	29.59	28.57
GSMUA_Achr3P23880_001	Banana	golgi, plasma membrane, vacuole	26.02	25.89
GSMUA_Achr1P14720_001	Banana	vacuole	22.96	23.32
GSMUA_Achr5P00430_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	22.45	23.04
GSMUA_Achr9P30950_001	Banana	plasma membrane	23.47	22.22
GSMUA_Achr9P30940_001	Banana	endoplasmic reticulum, plasma membrane	20.92	21.81
GSMUA_Achr5P00440_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	20.41	19.9

Protein Annotations

EnsemblPlants:GSMUA_Achr3P03240_001	EnsemblPlants:GSMUA_Achr3T03240_001	EnsemblPlantsGene:GSMUA_Achr3G03240_001	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF218
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000294E3F6	UniProt:M0SBE2
MapMan:35.1	:	:	:	:	:

Description

UPF0497 membrane protein 9 [Source:GMGC_GENE;Acc:GSMUA_Achr3G03240_001]

Coordinates

chr3:-:2114157..2115049

Molecular Weight (calculated)

20697.7 Da

IEP (calculated)

7.162

GRAVY (calculated)

0.814

Length

196 amino acids

Sequence
(BLAST)

001: MEEIGETTIP DIKEQLTNTT LSPSPPFTHT SLSDLLSSAS SRLFSLLLRL LAAAATLCAT VIMATSHDST TLFGLTLDAK FQYTPSFKFF VVANAIGCGY
101: SLVVLFVPPT SSLSRLVIVL DVMVAMLLTA AIAAAGALAQ LGKRGNSHAG WLPTCGQIPS FCHHVMGALI CALVGVVAYL LLLLHTIHTV LTPLFP

Best Arabidopsis Sequence Match ( AT1G03700.1 )
(BLAST)

001: MVKLTQRLGG LVLRFAAFCA ALGAVIAMIT SRERSSFFVI SLVAKYSDLA AFKYFVIANA IVTVYSFLVL FLPKESLLWK FVVVLDLMVT MLLTSSLSAA
101: VAVAQVGKRG NANAGWLPIC GQVPRFCDQI TGALIAGLVA LVLYVFLLIF SIHHVVDPFL LRKS

Arabidopsis Description

CASP-like protein 1C2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR57]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.