Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G248200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid, vacuole | 96.83 | 96.83 |
| TraesCS1B01G259400.1 | Wheat | plasma membrane | 86.24 | 86.24 |
| HORVU1Hr1G062380.3 | Barley | plastid | 93.65 | 81.57 |
| Os07t0442900-01 | Rice | plasma membrane | 71.96 | 65.7 |
| Zm00001d019457_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid, vacuole | 66.14 | 63.78 |
| Zm00001d005158_P001 | Maize | extracellular | 67.72 | 63.05 |
| EER98393 | Sorghum | endoplasmic reticulum, plasma membrane, plastid, vacuole | 64.55 | 60.7 |
| GSMUA_Achr5P00430_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 52.91 | 52.36 |
| GSMUA_Achr9P30950_001 | Banana | plasma membrane | 53.44 | 48.79 |
| KRH50921 | Soybean | plasma membrane | 44.44 | 43.52 |
| KRH02202 | Soybean | golgi, plasma membrane, vacuole | 43.92 | 43.01 |
| PGSC0003DMT400058342 | Potato | cytosol | 43.39 | 41.62 |
| Solyc01g067300.2.1 | Tomato | cytosol | 42.86 | 41.33 |
| AT3G06390.1 | Thale cress | plasma membrane | 42.86 | 40.7 |
| VIT_05s0020g01830.t01 | Wine grape | cytosol | 43.92 | 39.9 |
| KRH21024 | Soybean | cytosol, plasma membrane, vacuole | 39.68 | 39.68 |
| AT4G15610.1 | Thale cress | plasma membrane | 40.21 | 39.38 |
| CDY09750 | Canola | plasma membrane | 39.15 | 38.34 |
| CDX90580 | Canola | plasma membrane | 39.15 | 38.34 |
| Bra012777.1-P | Field mustard | plasma membrane | 39.15 | 38.34 |
| CDY05260 | Canola | plasma membrane | 40.21 | 37.07 |
| CDX76993 | Canola | plasma membrane | 40.21 | 37.07 |
| CDY24696 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 39.68 | 36.59 |
| Bra020752.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 39.68 | 36.59 |
| TraesCS3A01G160200.1 | Wheat | plasma membrane | 22.22 | 26.92 |
| TraesCS7A01G384700.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion, plasma membrane, plastid | 26.45 | 24.75 |
| TraesCS7A01G131000.1 | Wheat | plasma membrane | 19.05 | 22.22 |
| TraesCS5A01G049000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 22.75 | 21.94 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G248700.1 | EnsemblPlantsGene:TraesCS1A01G248700 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF150 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1A:-:440801166..440801965
Molecular Weight (calculated)
19797.7 Da
IEP (calculated)
9.921
GRAVY (calculated)
0.759
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTVEDSGN TAPSSPAGLR GADLALRVLL FAVSLSGLVV LVTAKQTEMV PLVLTPPFRF GPVPAQFKDS PALIYLLVAL CMTSLYSLLT AATSVKSMSS
101: SASCAKGIFV LILLDVVYAG IMASATGTAG AVAWVGLKGN SHTRWNKICN IYGKFCRHIG SATCLGLIAS IILVLLVVLN AYSLYRRSR
101: SASCAKGIFV LILLDVVYAG IMASATGTAG AVAWVGLKGN SHTRWNKICN IYGKFCRHIG SATCLGLIAS IILVLLVVLN AYSLYRRSR
001: MASTENPDPE TGKSEPIPAS ATPPPSSAAS FLDCRKIDII TRVLLFSATL TALIVMVTSD QTEMTQLPGV SSPAPVSAEF NDSPAFIYFV VALVVASFYA
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT
101: LISTLVSISL LLKPEFTAQF SIYLASLDMV MLGILASATG TAGGVAYIAL KGNEEVGWNK ICNVYDKFCR YIATSLALSL FASLLLLVLS IWSALSKRT
Arabidopsis Description
CASP-like protein 1D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.