Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006495 | |
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | PGSC0003DMT400006495 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007790.2.1 | Tomato | plasma membrane | 96.22 | 96.22 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 77.84 | 78.26 |
| CDY00740 | Canola | plasma membrane | 2.7 | 3.07 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 2.7 | 2.49 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 2.7 | 2.48 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 2.7 | 2.45 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 2.7 | 2.45 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 2.7 | 2.45 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 2.7 | 2.45 |
| PGSC0003DMT400003379 | Potato | cytosol, plasma membrane, vacuole | 2.16 | 2.23 |
| PGSC0003DMT400064736 | Potato | plasma membrane | 2.16 | 2.13 |
| KRH72260 | Soybean | plasma membrane | 2.16 | 2.06 |
| KRH72258 | Soybean | plasma membrane | 2.16 | 2.06 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.06 |
| KRH32784 | Soybean | plasma membrane | 2.16 | 2.05 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.05 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.04 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.0 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.0 |
| PGSC0003DMT400072599 | Potato | plasma membrane | 2.16 | 1.89 |
| PGSC0003DMT400022852 | Potato | plasma membrane | 2.16 | 1.86 |
| CDX84159 | Canola | plasma membrane | 1.62 | 1.45 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 1.62 | 1.42 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.99 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX75070 | Canola | plasma membrane | 1.08 | 0.97 |
| CDY43749 | Canola | plasma membrane | 0.54 | 0.55 |
| Bra005298.1-P | Field mustard | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400047376 | EnsemblPlantsGene:PGSC0003DMG400018410 | EntrezGene:102579988 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF81 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400018410 | RefSeq:XP_006355125.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002967804 | UniProt:M1BKM9 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018410]
Coordinates
chr5:+:4699856..4700602
Molecular Weight (calculated)
19758.3 Da
IEP (calculated)
9.252
GRAVY (calculated)
0.746
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAVSIEAGE GSKAKRVHGV NRGISVFDLI LRIVALVGTL ASAVAMGTAD QALSFSTQIV NFEAQYDDID AFKFFVVSNS ITCVYLALSI PISIFHIIRS
101: RAGKSRVLLI VLDAIMLVFL TSGASAAAAI VYLAHNGNTS TNWFSICQQY TDFCQRSAGS LIGSFGAMAL MVLLIILSSI ALSRR
101: RAGKSRVLLI VLDAIMLVFL TSGASAAAAI VYLAHNGNTS TNWFSICQQY TDFCQRSAGS LIGSFGAMAL MVLLIILSSI ALSRR
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.