Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 3
- golgi 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064736 | Potato | plasma membrane | 67.04 | 63.83 |
| KRH70770 | Soybean | plasma membrane | 55.31 | 53.23 |
| KRG89581 | Soybean | plasma membrane | 53.63 | 51.61 |
| KRG89579 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 52.51 | 50.54 |
| PGSC0003DMT400072599 | Potato | plasma membrane | 47.49 | 40.09 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 46.93 | 39.81 |
| Solyc02g088160.2.1 | Tomato | cytosol | 49.72 | 38.86 |
| PGSC0003DMT400022852 | Potato | plasma membrane | 46.37 | 38.6 |
| Os02t0578366-00 | Rice | plasma membrane | 10.61 | 9.45 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 2.23 | 2.17 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 2.23 | 2.16 |
| Bra026853.1-P | Field mustard | plasma membrane | 1.68 | 1.54 |
| CDY33770 | Canola | plasma membrane | 1.68 | 1.54 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 1.68 | 1.44 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003379 | EnsemblPlantsGene:PGSC0003DMG400001337 | EntrezGene:102579142 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF81 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400001337 | RefSeq:XP_006338436.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002949049 | UniProt:M0ZLJ2 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400001337]
Coordinates
chr2:-:46088402..46089289
Molecular Weight (calculated)
19072.5 Da
IEP (calculated)
9.184
GRAVY (calculated)
0.794
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSEAGDDS KPKGNRGISF LDFIMRIVAI LGTLGSAIAM GTTNETLPSF EQFIRFKAEY KNLPTFTFFV VANGIVSAYL AVSLVLSILH IVMSGARITR
101: VVLIFFDTVM MAFLTSGASA AAAIVYLAHK GNASANWIAI CQQYNSFCDR ASGSLVGSFI GVLVFLLIII LSALALSRN
101: VVLIFFDTVM MAFLTSGASA AAAIVYLAHK GNASANWIAI CQQYNSFCDR ASGSLVGSFI GVLVFLLIII LSALALSRN
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.