Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g067190.2.1 | Tomato | extracellular, plasma membrane | 85.64 | 91.48 |
| PGSC0003DMT400003379 | Potato | cytosol, plasma membrane, vacuole | 63.83 | 67.04 |
| KRG89581 | Soybean | plasma membrane | 57.98 | 58.6 |
| KRG89579 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 56.91 | 57.53 |
| KRH70770 | Soybean | plasma membrane | 56.91 | 57.53 |
| PGSC0003DMT400072599 | Potato | plasma membrane | 48.4 | 42.92 |
| PGSC0003DMT400022852 | Potato | plasma membrane | 48.4 | 42.33 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 45.74 | 40.76 |
| Os02t0578366-00 | Rice | plasma membrane | 9.04 | 8.46 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 3.19 | 3.26 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 2.13 | 2.16 |
| Bra026853.1-P | Field mustard | plasma membrane | 1.6 | 1.54 |
| CDY33770 | Canola | plasma membrane | 1.6 | 1.54 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 1.6 | 1.44 |
Protein Annotations
| EntrezGene:102601002 | MapMan:35.1 | EMBL:BM404341 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0071555 | UniProt:M1CCT6 | PFAM:PF04535 | EnsemblPlantsGene:PGSC0003DMG400025146 | PGSC:PGSC0003DMG400025146 |
| EnsemblPlants:PGSC0003DMT400064736 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF81 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000295D0EC |
| RefSeq:XP_006363407.1 | SEG:seg | : | : | : | : |
Description
UPF0497 membrane protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400025146]
Coordinates
chr2:+:25541222..25542809
Molecular Weight (calculated)
20285.1 Da
IEP (calculated)
10.665
GRAVY (calculated)
0.653
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAGALELGH ASKTTKSGVN RGMSILDLFI RIIAIIATLG SAIAMGTTNE TLPFFTQFVR FKAKYSDLPT FTFFVVANAI VSAYLVLSLG LSIYHIMRSR
101: AQATRIALIF FDAAMLGLLT GGASASAAIV YLAHKGNRKT NWFPICQQYD SFCHRTSGSL VGSFAGVVLI ILLIFLSAIA LSRQSLNH
101: AQATRIALIF FDAAMLGLLT GGASASAAIV YLAHKGNRKT NWFPICQQYD SFCHRTSGSL VGSFAGVVLI ILLIFLSAIA LSRQSLNH
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.