Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 2
- plasma membrane 4
- extracellular 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 94.79 | 95.24 |
| VIT_06s0080g00840.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 63.51 | 66.67 |
| VIT_08s0007g02880.t01 | Wine grape | cytosol, plasma membrane, vacuole | 57.82 | 58.37 |
| GSMUA_Achr8P07780_001 | Banana | plasma membrane | 54.03 | 55.34 |
| PGSC0003DMT400072599 | Potato | plasma membrane | 53.55 | 53.3 |
| PGSC0003DMT400022852 | Potato | plasma membrane | 50.71 | 49.77 |
| KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 50.71 | 49.08 |
| KRH26660 | Soybean | cytosol, plasma membrane, plastid | 50.71 | 49.08 |
| PGSC0003DMT400003379 | Potato | cytosol, plasma membrane, vacuole | 39.81 | 46.93 |
| GSMUA_Achr3P22600_001 | Banana | cytosol, plasma membrane, vacuole | 50.24 | 46.9 |
| TraesCS7B01G228600.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 48.34 | 45.95 |
| HORVU7Hr1G078490.1 | Barley | cytosol, plasma membrane, plastid, vacuole | 48.34 | 45.95 |
| PGSC0003DMT400064736 | Potato | plasma membrane | 40.76 | 45.74 |
| TraesCS7D01G324700.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 47.87 | 45.7 |
| TraesCS7A01G327900.1 | Wheat | plasma membrane | 47.39 | 44.84 |
| KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 42.65 | 41.67 |
| Zm00001d001779_P001 | Maize | extracellular | 44.08 | 40.79 |
| Zm00001d052757_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 42.65 | 40.54 |
| TraesCS2B01G400200.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 42.65 | 40.18 |
| EES13180 | Sorghum | plastid | 43.6 | 39.15 |
| EES11679 | Sorghum | plastid | 41.71 | 38.43 |
| Os08t0101900-00 | Rice | cytosol, peroxisome, vacuole | 33.65 | 37.17 |
| TraesCS2A01G383000.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 43.13 | 35.14 |
| HORVU2Hr1G089180.1 | Barley | plastid | 42.18 | 34.36 |
| TraesCS2D01G379300.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 41.71 | 34.24 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 1.42 | 1.63 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 1.42 | 1.62 |
Protein Annotations
| EntrezGene:102594060 | MapMan:35.1 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007043 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030312 |
| GO:GO:0042545 | GO:GO:0042803 | GO:GO:0048226 | UniProt:M1A5D6 | PFAM:PF04535 | EnsemblPlantsGene:PGSC0003DMG400005887 |
| PGSC:PGSC0003DMG400005887 | EnsemblPlants:PGSC0003DMT400015067 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF222 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI000294BE67 | RefSeq:XP_006361147.1 | SEG:seg | : | : | : |
Description
UPF0497 membrane protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005887]
Coordinates
chr6:-:54773036..54774143
Molecular Weight (calculated)
22752.6 Da
IEP (calculated)
8.327
GRAVY (calculated)
0.632
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKSTSYET AINMSETESI KQKSSSAAPI IATTKTISHN QKGGWRRGVS IFDFILRLCA LVTTLAAATT MGTTEETLPL FTQFFQFQAS YDDLPAFSYF
101: VVANAIASAY VVLSLPFSIV CIVRPHLVGA KLVLLILDTV MVAFTTAAAS AAAAIVYLAH NGNSTTQWVA ICQQFGDFCQ RVSGAVVASF IAAFIFIILV
201: VFSAVTLRRH N
101: VVANAIASAY VVLSLPFSIV CIVRPHLVGA KLVLLILDTV MVAFTTAAAS AAAAIVYLAH NGNSTTQWVA ICQQFGDFCQ RVSGAVVASF IAAFIFIILV
201: VFSAVTLRRH N
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.