Factsheet for VIT_06s0080g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	72.14	69.38
PGSC0003DMT400015067	Potato	plasma membrane	66.67	63.51
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	66.17	63.33
GSMUA_Achr8P07780_001	Banana	plasma membrane	58.71	57.28
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	57.71	53.21
KRH26660	Soybean	cytosol, plasma membrane, plastid	56.72	52.29
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	57.71	51.33
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	53.23	48.2
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	52.24	47.3
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	51.74	47.06
TraesCS7A01G327900.1	Wheat	plasma membrane	51.74	46.64
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	49.25	45.83
Zm00001d001779_P001	Maize	extracellular	50.75	44.74
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	49.75	44.64
EES11679	Sorghum	plastid	49.25	43.23
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	45.27	40.99
EES13180	Sorghum	plastid	47.76	40.85
HORVU2Hr1G089180.1	Barley	plastid	51.74	40.15
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	50.75	39.38
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	37.31	39.27
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	49.75	38.91

Protein Annotations

EntrezGene:100256998	wikigene:100256998	MapMan:35.1	UniProt:A7QF77	InterPro:CASP/CASPL	InterPro:CASP_dom
ProteinID:CBI28289	ProteinID:CBI28289.3	EMBL:FN595757	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0051536	GO:GO:0071555	EntrezGene:LOC100256998	wikigene:LOC100256998	PFAM:PF04535
PANTHER:PTHR11615	PANTHER:PTHR11615:SF222	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI00015CBCEC	ArrayExpress:VIT_06s0080g00840
EnsemblPlantsGene:VIT_06s0080g00840	EnsemblPlants:VIT_06s0080g00840.t01	unigene:Vvi.22409	RefSeq:XP_002273638	RefSeq:XP_002273638.1	SEG:seg

Description

Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A7QF77]

Coordinates

chr6:+:20863401..20864440

Molecular Weight (calculated)

21227.0 Da

IEP (calculated)

8.338

GRAVY (calculated)

0.793

Length

201 amino acids

Sequence
(BLAST)

001: MKSTGEATAI NIGETKSASA TTVATTKAIQ HPKAGLKRGL AIFDFILRLS AIGAALAATT TMGTTDQTLP FFTQFFQFQA SYDDLPAFSF FVIANAIASG
101: YLFLSLPFSI VCIVRPHAMG ARLLLVICDT VMVALTIAAA AAAAAIVYLA HNGNSNANWV AICQQFDDFC QSVSGAVVAS FIAAVLFMLM IVLSAFSLRK
201: H

Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)

001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T

Arabidopsis Description

CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.