Factsheet for Solyc06g074230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, vacuole, plastid

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015067	Potato	plasma membrane	95.24	94.79
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	63.33	66.17
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	58.57	58.85
Solyc10g083250.1.1	Tomato	plasma membrane	55.71	55.19
GSMUA_Achr8P07780_001	Banana	plasma membrane	52.86	53.88
Solyc09g010200.2.1	Tomato	cytosol, plasma membrane, vacuole	51.9	50.7
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	49.52	47.71
KRH26660	Soybean	cytosol, plasma membrane, plastid	49.52	47.71
Solyc02g067190.2.1	Tomato	extracellular, plasma membrane	39.52	47.16
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	49.05	46.4
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	49.05	46.4
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	49.52	46.02
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	48.1	45.7
TraesCS7A01G327900.1	Wheat	plasma membrane	48.1	45.29
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	44.29	41.89
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	42.86	41.67
Zm00001d001779_P001	Maize	extracellular	44.29	40.79
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	43.33	40.62
EES13180	Sorghum	plastid	44.76	40.0
EES11679	Sorghum	plastid	42.38	38.86
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	34.29	37.7
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	44.29	35.91
HORVU2Hr1G089180.1	Barley	plastid	43.33	35.14
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	42.86	35.02
Solyc02g088160.2.1	Tomato	cytosol	20.95	19.21
Solyc04g005620.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	1.9	2.17
Solyc05g007790.2.1	Tomato	plasma membrane	1.9	2.16

Protein Annotations

MapMan:35.1	InterPro:CASP/CASPL	InterPro:CASP_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005886	GO:GO:0007043	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030312	GO:GO:0042545
GO:GO:0042803	GO:GO:0048226	GO:GO:0051536	UniProt:K4C9E1	PFAM:PF04535	PANTHER:PTHR11615
PANTHER:PTHR11615:SF222	EnsemblPlantsGene:Solyc06g074230.2	EnsemblPlants:Solyc06g074230.2.1	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI00027663BD
SEG:seg	:	:	:	:	:

Description

CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4C9E1]

Coordinates

chr6:-:45896187..45897260

Molecular Weight (calculated)

22520.4 Da

IEP (calculated)

7.933

GRAVY (calculated)

0.659

Length

210 amino acids

Sequence
(BLAST)

001: MDSKSTSYET AINMSETEST KQKSSSGAPI IATTKTISHN QKGGWRRGLS IFDFILRLCA LATTLAAATA MGTTEETLPL FTQFFQFQAS YDDLPAFSYF
101: VVANAIASAY VVLSLPFSIV CIVRPHLVGV KLLLLILDTV MVAFTTAAAA AAAAIVYLAE NGNSTTQWVA ICQQFGDFCQ RVSGAVVASF IAAFIFIILV
201: VFSAVTLRRA

Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)

001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH

Arabidopsis Description

CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.