CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	94.5	94.5
KRH72258	Soybean	plasma membrane	51.38	57.73
KRH72256	Soybean	cytosol, plasma membrane, vacuole	52.29	57.0
KRH72259	Soybean	cytosol, plasma membrane, vacuole	50.92	56.92
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	52.29	56.72
KRH72260	Soybean	plasma membrane	50.46	56.7
KRH32782	Soybean	cytosol, plasma membrane, vacuole	50.46	56.7
KRH32783	Soybean	cytosol, plasma membrane, vacuole	50.92	56.63
KRH32784	Soybean	plasma membrane	50.0	55.9
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	49.08	51.2
KRH32785	Soybean	cytosol, plasma membrane, vacuole	46.79	51.0
PGSC0003DMT400015067	Potato	plasma membrane	49.08	50.71
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	50.0	50.46
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	47.71	49.52
KRH74902	Soybean	endoplasmic reticulum, extracellular	15.6	48.57
GSMUA_Achr8P07780_001	Banana	plasma membrane	44.04	46.6
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	45.41	43.81
KRH70770	Soybean	plasma membrane	36.24	42.47
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	41.28	40.72
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	41.28	40.54
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	41.28	40.54
Zm00001d001779_P001	Maize	extracellular	41.28	39.47
TraesCS7A01G327900.1	Wheat	plasma membrane	40.37	39.46
KRG89581	Soybean	plasma membrane	33.03	38.71
EES11679	Sorghum	plastid	40.37	38.43
KRG89579	Soybean	endoplasmic reticulum, plasma membrane, vacuole	32.57	38.17
EES13180	Sorghum	plastid	40.83	37.87
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	37.61	36.61
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	37.16	36.49
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	28.9	32.98
KRH74901	Soybean	cytosol, plasma membrane, vacuole	13.76	32.97
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	37.61	31.66
HORVU2Hr1G089180.1	Barley	plastid	36.7	30.89
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	36.24	30.74

Protein Annotations

EntrezGene:100527457	MapMan:35.1	UniProt:A0A0R0HJQ8	EMBL:BT092301	UniProt:C6T4E0	InterPro:CASP/CASPL
InterPro:CASP_dom	EnsemblPlantsGene:GLYMA_12G186500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0051536	GO:GO:0071555	EnsemblPlants:KRH26660	ProteinID:KRH26660	ProteinID:KRH26660.1	PFAM:PF04535
PANTHER:PTHR11615	PANTHER:PTHR11615:SF222	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0001B158F3	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:34725542..34726776

Molecular Weight (calculated)

23070.2 Da

IEP (calculated)

8.333

GRAVY (calculated)

0.634

Length

218 amino acids

Sequence
(BLAST)

001: MDSGKEGEAP AATSSPESRR TRSNGKVKAF ADAAPPSATV VSTKATPLPR GGWKKGVAIL DFIIRLGAIG SALGAAAIMG NSEQILPFFT QFFQFHAQWD
101: DFPMFQFFVF ANGAAGGFLI LSLPFSIVCI VRPYTVGPRL LLVILDILMM ALVMAAASSA AAVVYLAHNG SQDANWIAIC QQFTDFCQVT SEAVVASFVA
201: AFLLICLIVV SSVALKRG

Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)

001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T

Arabidopsis Description

CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.