Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G324700.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 95.07 | 95.93 |
| HORVU7Hr1G078490.1 | Barley | cytosol, plasma membrane, plastid, vacuole | 95.07 | 95.5 |
| TraesCS7B01G228600.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 94.62 | 95.05 |
| Zm00001d052757_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.92 | 66.22 |
| EES13180 | Sorghum | plastid | 65.47 | 62.13 |
| Os08t0101900-00 | Rice | cytosol, peroxisome, vacuole | 48.43 | 56.54 |
| GSMUA_Achr8P07780_001 | Banana | plasma membrane | 49.78 | 53.88 |
| VIT_06s0080g00840.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 46.64 | 51.74 |
| TraesCS2A01G383000.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 58.74 | 50.58 |
| GSMUA_Achr3P22600_001 | Banana | cytosol, plasma membrane, vacuole | 50.67 | 50.0 |
| TraesCS7A01G189300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 40.81 | 49.73 |
| VIT_08s0007g02880.t01 | Wine grape | cytosol, plasma membrane, vacuole | 46.19 | 49.28 |
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 45.29 | 48.1 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 44.84 | 47.39 |
| KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 40.36 | 41.28 |
| KRH26660 | Soybean | cytosol, plasma membrane, plastid | 39.46 | 40.37 |
| KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 36.77 | 37.96 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G327900.1 | EnsemblPlantsGene:TraesCS7A01G327900 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF215 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7A:-:476935875..476936546
Molecular Weight (calculated)
23682.1 Da
IEP (calculated)
9.428
GRAVY (calculated)
0.610
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTNEATVI HMDDTTGKAP VTAAPPPGAA PAPVQQQQQR KSGGGVPFIL RSGAEGFRRC MAFVDLLLRV AAFGPTLAAA ISTGTSDETL SVFTEYFQFR
101: ARFDDFPAFT FFMVANAVAA GYLVLSLPFS IVGIIRPKAT GVRLLLLVCD TVMVVLLTAA ASAAAAIVYV AHEGSRRANW APICMQFHGF CQRTSGAVVA
201: SFLAVLVFIL LVLLSACAIR RHR
101: ARFDDFPAFT FFMVANAVAA GYLVLSLPFS IVGIIRPKAT GVRLLLLVCD TVMVVLLTAA ASAAAAIVYV AHEGSRRANW APICMQFHGF CQRTSGAVVA
201: SFLAVLVFIL LVLLSACAIR RHR
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.