Factsheet for VIT_08s0007g02880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	69.38	72.14
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	58.85	58.57
PGSC0003DMT400015067	Potato	plasma membrane	58.37	57.82
GSMUA_Achr8P07780_001	Banana	plasma membrane	56.46	57.28
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	59.33	54.87
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	51.67	49.54
KRH26660	Soybean	cytosol, plasma membrane, plastid	51.2	49.08
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	50.24	47.51
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	49.76	46.85
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	49.28	46.4
TraesCS7A01G327900.1	Wheat	plasma membrane	49.28	46.19
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	47.85	44.64
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	47.37	44.59
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	45.93	44.44
EES11679	Sorghum	plastid	46.41	42.36
Zm00001d001779_P001	Maize	extracellular	45.45	41.67
EES13180	Sorghum	plastid	46.41	41.28
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	49.28	39.77
HORVU2Hr1G089180.1	Barley	plastid	48.8	39.38
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	47.37	38.52
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	33.97	37.17

Protein Annotations

EntrezGene:100242602	wikigene:100242602	MapMan:35.1	UniProt:A7PP95	InterPro:CASP/CASPL	InterPro:CASP_dom
ProteinID:CBI30337	ProteinID:CBI30337.3	EMBL:FN595991	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0051536	GO:GO:0071555	EntrezGene:LOC100242602	wikigene:LOC100242602	PFAM:PF04535
PANTHER:PTHR11615	PANTHER:PTHR11615:SF116	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI00015C9DB2	ArrayExpress:VIT_08s0007g02880
EnsemblPlantsGene:VIT_08s0007g02880	EnsemblPlants:VIT_08s0007g02880.t01	RefSeq:XP_002276085	RefSeq:XP_002276085.1	SEG:seg	:

Description

Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:A7PP95]

Coordinates

chr8:-:16943614..16944421

Molecular Weight (calculated)

22024.0 Da

IEP (calculated)

7.579

GRAVY (calculated)

0.756

Length

209 amino acids

Sequence
(BLAST)

001: MSSGANATTI DVPETRAEAK GKAPLIAAPI VATTKATPHP NAGWKKGLAI FDFLLRLAAI AATLAAATTM GTTDETLPFF TQFFQFQASF DDLPAFMFFV
101: VATAIASGYL ALSLPFSLVS IFRPHAQGIR LLLIISDTVM LALTTAGAAS ATAIVYLAHN GDSSANWIAI CQQFTDFCQS VSGAVVASFI AVVIFMLLVM
201: MSALALRKH

Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)

001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH

Arabidopsis Description

CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.